View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14691_low_9 (Length: 375)
Name: NF14691_low_9
Description: NF14691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14691_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 3 - 375
Target Start/End: Complemental strand, 47481930 - 47481558
Alignment:
| Q |
3 |
atcacctacgccgacaccgacgtcgtcatcgtcggtgccggttccgctggtctttcctgcgcttacgaattatccaaaaacccaaacatcagtattgcca |
102 |
Q |
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| T |
47481930 |
atcacctacgccgacaccgacgtcgtcatagtcggtgccggttccgccggtctttcctgcgcttacgaattatccaaaaacccaaacatcagtattgcca |
47481831 |
T |
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| Q |
103 |
tcatcgaacaatccgtcagccctggtggtggtgcatggctcggtggccagctcttctccgccatggttgtacgcaaaccagctcacctcttcctcgacga |
202 |
Q |
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| T |
47481830 |
tcatcgaacaatccgtcagccctggtggtggtgcatggctcggtggccagctcttctccgccatggttgtacgcaaaccagcccacctcttcctcgacga |
47481731 |
T |
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| Q |
203 |
aatcggtgttgaatacgatgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaat |
302 |
Q |
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| T |
47481730 |
aatcggtgttgaatatgacgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaat |
47481631 |
T |
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| Q |
303 |
gtaaaacttttcaatgctgttgctgctgaggatttgattgtgaaggaaaacagagttgctggtgttgttacaa |
375 |
Q |
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| T |
47481630 |
gtaaaacttttcaatgctgttgctgctgaggatttgattgtgaaggaaaacagagttgctggtgttgttacaa |
47481558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 370
Target Start/End: Complemental strand, 31407612 - 31407461
Alignment:
| Q |
219 |
gatgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaatgtaaaacttttcaatg |
318 |
Q |
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| T |
31407612 |
gatgaacaggacgactatgtagtgatcaagcatgctgctctcttcacttccaccatcatgagcaagctactagcaaggccaaacgtgaagcttttcaatg |
31407513 |
T |
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| Q |
319 |
ctgttgctgctgaggatttgattgtgaaggaaaacagagttgctggtgttgt |
370 |
Q |
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| T |
31407512 |
ctgtagctgctgaggatttgattgtgaagaatgaaagagttggtggtgttgt |
31407461 |
T |
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