View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14692_high_2 (Length: 554)
Name: NF14692_high_2
Description: NF14692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14692_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 170 - 380
Target Start/End: Original strand, 1663724 - 1663925
Alignment:
| Q |
170 |
tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1663724 |
tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactg |
1663823 |
T |
|
| Q |
270 |
ttcatcgtggtgtttatgatggcatagatgttgctggtacttctctcnnnnnnnnnnnnnnnnnctctcactttcatgcattgtactctctttcttattt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1663824 |
ttcatcgtggtgtttatgatggcatagatgttgctggtacttctct---------tttttttctctctcactttcatgcattgtactctctttcttattt |
1663914 |
T |
|
| Q |
370 |
tggcattggtg |
380 |
Q |
| |
|
||||||||||| |
|
|
| T |
1663915 |
tggcattggtg |
1663925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 1663568 - 1663670
Alignment:
| Q |
14 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggacta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1663568 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggacta |
1663667 |
T |
|
| Q |
114 |
tgg |
116 |
Q |
| |
|
||| |
|
|
| T |
1663668 |
tgg |
1663670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 31046776 - 31046676
Alignment:
| Q |
14 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatctt--agtagagcatggac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31046776 |
atgaagaagagtgagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagacgaacaattacaaaggcatcttacagtagagcatggac |
31046677 |
T |
|
| Q |
112 |
t |
112 |
Q |
| |
|
| |
|
|
| T |
31046676 |
t |
31046676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 407 - 536
Target Start/End: Original strand, 1663942 - 1664071
Alignment:
| Q |
407 |
ccttatctcacataacatgaagaacagcactgttaaacgtgtttgacttggagcaattctgagaagtttctcaaaaaa-----gagtgagaacaaaatat |
501 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
1663942 |
ccttatctcacataacatgaagaacgg-----ttaaacgtgtttaacttggagcaattatgagaagtttcttagaaagcgtgcgagtgagaacaaaatat |
1664036 |
T |
|
| Q |
502 |
gctaaaaagattcatgttggtttgtctggtcaatc |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1664037 |
gctaaaaagattcatgttggtttgtctggtcaatc |
1664071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 43970824 - 43970907
Alignment:
| Q |
206 |
tgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgat |
289 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
43970824 |
tgggaaattgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgat |
43970907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 533
Target Start/End: Original strand, 14352016 - 14352056
Alignment:
| Q |
493 |
acaaaatatgctaaaaagattcatgttggtttgtctggtca |
533 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||||| |
|
|
| T |
14352016 |
acaaaatatgctgaaaagactcatgttggtttgtatggtca |
14352056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 35189455 - 35189562
Alignment:
| Q |
201 |
aagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatggcatagatgt |
300 |
Q |
| |
|
|||| ||||| |||||||||||||| || || ||||| | |||| | |||||||| ||||| ||||||||||| |||||| | ||||||||| |||||| |
|
|
| T |
35189455 |
aagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgt |
35189554 |
T |
|
| Q |
301 |
tgctggta |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
35189555 |
tgctggta |
35189562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 27646768 - 27646720
Alignment:
| Q |
485 |
gagtgagaacaaaatatgctaaaaagattcatgttggtttgtctggtca |
533 |
Q |
| |
|
||||||| |||||| ||||| |||||| |||||||||||||| |||||| |
|
|
| T |
27646768 |
gagtgaggacaaaacatgctgaaaagactcatgttggtttgtatggtca |
27646720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University