View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14692_high_3 (Length: 391)

Name: NF14692_high_3
Description: NF14692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14692_high_3
NF14692_high_3
[»] chr8 (5 HSPs)
chr8 (246-375)||(24290565-24290694)
chr8 (1-74)||(24281386-24281459)
chr8 (82-152)||(24290400-24290470)
chr8 (148-208)||(24290493-24290553)
chr8 (15-71)||(24288218-24288274)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 246 - 375
Target Start/End: Original strand, 24290565 - 24290694
Alignment:
Q  246 atatataaagctcaccaattgtcaaaaacagaaacacaacacgaaatagaaaacaaatattagacagtacaatgcaaacttcattatggaacctaaataa 345  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24290565 atatataaagctcaccaattgtcagaaacagaaacacaacatgaaaaagaaaacaaatattagacagtacaatgcaaacttctttatggaacctaaataa 24290664  T
Q  346 acttttccttcattgatgacagcaaagaga 375  Q
    ||||||||||||||||||||||||||||||    
T  24290665 acttttccttcattgatgacagcaaagaga 24290694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24281386 - 24281459
Alignment:
Q  1 ttatacaaacacatgaaaattttcttatctctgtaataattctttgatatcatatccttgcaactgtgtatcaa 74  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  24281386 ttatacaaacacatgaaaattttcctatctctgcaataattctttgatatcatatccttgcaactgtgaatcaa 24281459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 24290400 - 24290470
Alignment:
Q  82 ttattaacatcaacaccgataaactcgtgttcttttgtacaaacaatatattttgtaagctcaagcttatg 152  Q
    ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24290400 ttattaacatcaacaccaataaactcgtgttcttttgtacataaaatatattttgtaagctcaagcttatg 24290470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 24290493 - 24290553
Alignment:
Q  148 ttatgaaccacaagtttagaccataaaaaatatctaaaccaaccccctaccaacccatcca 208  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24290493 ttatgaaccaaaagtttagaccatacaaaatatctaaaccaaccccctaccaacccatcca 24290553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 24288218 - 24288274
Alignment:
Q  15 gaaaattttcttatctctgtaataattctttgatatcatatccttgcaactgtgtat 71  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  24288218 gaaaattttcctatctctgcaataattctttgatatcatatccttgcaactgtgtat 24288274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University