View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14692_low_1 (Length: 795)
Name: NF14692_low_1
Description: NF14692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14692_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 295 - 779
Target Start/End: Complemental strand, 28982528 - 28982043
Alignment:
| Q |
295 |
tttaaaattctctagtttagcaactaataattaaacttataaaaacacctacatgcatgcatcctatatatggtgtgagagtttgatggatttcttttcc |
394 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
28982528 |
tttaaaattctctagtttaggaactaataattaaacttataaaaacacctacatgcatgcatcctatatatggtgt-agagtttgatgggtttcttttcc |
28982430 |
T |
|
| Q |
395 |
atatatcttacattgcatatagatgttgtaatgtgtcactatcaaaattcaacatatatcatatctaacctattatcactgtaatgtgtcactaactttt |
494 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28982429 |
atatatcttacat--------gatgttgtaatgtgtcactatcaaaattcaacatatttcatatctaacctattatcactgtaatgtgtcactaactttt |
28982338 |
T |
|
| Q |
495 |
tcattcatgcaatgcaagg-----------tgtactcattattattaattattgtatgatgnnnnnnnnattgaccaaattattcgtgcagaagacactt |
583 |
Q |
| |
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||||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
28982337 |
tcattcatgcaatgcaaggaggtgttggcgtgtactcattattactaattattgtatgctgttttttt-attgaccaaattattcgtgcagaagacactt |
28982239 |
T |
|
| Q |
584 |
ctccataaccaacgttgattagtagcatatttagtaatggtaaattaaccacttcaatttaatggaagaaagtgtaacaggttgttccggcaagcaccta |
683 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28982238 |
ctccataaccaacgttgattagtagcatatttagtgatggtaaattaaccacttccatttaatggaagaaagtgtaacaggttgttccggcaagcaccta |
28982139 |
T |
|
| Q |
684 |
aaaaatgggaaaacatctccaaagtataacttaatgggacagataaaaacaaacaaatggaatggtaggaaaaagtttagagttactcatgttatt |
779 |
Q |
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| T |
28982138 |
aaaaatgggaaaacatctccaaagtataacttaatgggacagataaaaacaaacaaatggaatggtaggaaaaagtttagagttactcatgttatt |
28982043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 28983555 - 28983343
Alignment:
| Q |
18 |
ggagagatgggagacttcatcatttttctacatgccccttagtgaccatcatctctctatttatgcacaatttaaattttcttaattgtagaatttccac |
117 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28983555 |
ggagagaggggagacttcatcatttttctacatgccctttagtgaccatcatctctctatttatgcacaatttaaattttcttaattgtagaatttccac |
28983456 |
T |
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| Q |
118 |
atatcaacttgcctcaaccaataatattatgccaagtgtacttcatcatacgtcatattgaatcataacagcgtggtgtgaatcaaatctaaaacacata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28983455 |
gtatcaacttgcctcaaccaataatattatgccaagtgtacttcatcatatgtcatattgaatcataacagcgtggtgtgaatcaaatctaaaacacata |
28983356 |
T |
|
| Q |
218 |
ttagttctaaata |
230 |
Q |
| |
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|| |||||||||| |
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| T |
28983355 |
ttggttctaaata |
28983343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 680 - 780
Target Start/End: Complemental strand, 28966489 - 28966386
Alignment:
| Q |
680 |
cctaaaaaatgggaaaacatctccaaagtataact---taatgggacagataaaaacaaacaaatggaatggtaggaaaaagtttagagttactcatgtt |
776 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||||||||| ||||||||||||||| |||| || |
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| T |
28966489 |
cctaaaaaatgggaaaacatctccaatgtataactaattaatgggacaaataaaaacaaacaaaagaaatggtagggaaaagtttagagttattcatatt |
28966390 |
T |
|
| Q |
777 |
attt |
780 |
Q |
| |
|
|||| |
|
|
| T |
28966389 |
attt |
28966386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 679 - 773
Target Start/End: Complemental strand, 28942734 - 28942637
Alignment:
| Q |
679 |
acctaaaaaatgggaaaacatctccaaagtataact---taatgggacagataaaaacaaacaaatggaatggtaggaaaaagtttagagttactcat |
773 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |||| |
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| T |
28942734 |
acctaaaaaataggaaaacatctccaaagttttactgaataatgggacaaataaaaacaaacaaaagaaatggtaggaaaaagtttagagttattcat |
28942637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 28982766 - 28982711
Alignment:
| Q |
248 |
atgttttataattttccccaacaaccgtttttctaacaaaggacccatttaaaatt |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
28982766 |
atgttttataattttccccaacaaccgtttttccaacaaaggactcatttaaaatt |
28982711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 28966592 - 28966535
Alignment:
| Q |
403 |
tacattgcatatagatgttgtaatgtgtcactatcaaaattcaacatatatcatatcta |
461 |
Q |
| |
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||||||||||||||||||||||||| | | ||||||||||||| |||||||| ||||| |
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| T |
28966592 |
tacattgcatatagatgttgtaatgcatgattatcaaaattcaa-atatatcacatcta |
28966535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 11364665 - 11364716
Alignment:
| Q |
37 |
tcatttttctacatgccccttagtgaccatcatctctctatttatgcacaat |
88 |
Q |
| |
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|||||||||| ||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
11364665 |
tcatttttcttcataccccttagtgatcatcatttctctatttatgcacaat |
11364716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 42863759 - 42863689
Alignment:
| Q |
18 |
ggagagatgggagacttcatcatttttctacatgccccttagtgaccatcatctctctatttatgcacaat |
88 |
Q |
| |
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||||||| | ||||||| |||||||||| ||| || ||||||||||||||| ||||||||||||||||| |
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| T |
42863759 |
ggagagaagagagacttggtcatttttcttcatacctcttagtgaccatcattcctctatttatgcacaat |
42863689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 32471318 - 32471359
Alignment:
| Q |
126 |
ttgcctcaaccaataatattatgccaagtgtacttcatcata |
167 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||| ||||| |
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| T |
32471318 |
ttgcctcaaccaataatattatgccaagcgtatttcctcata |
32471359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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