View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14692_low_4 (Length: 237)
Name: NF14692_low_4
Description: NF14692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14692_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2434636 - 2434867
Alignment:
| Q |
1 |
aattattattagatatcagtataagataacacagttgcaattgatcaaggaatctgaagtattgagaattt----------attttttatcatagaataa |
90 |
Q |
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| T |
2434636 |
aattattattagatatcagtataagctaacacagttgcaattgatcaaggaatctgaagtattgagatttttttattttttattttttatcatagaataa |
2434735 |
T |
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| Q |
91 |
gtgtagctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttag |
190 |
Q |
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| T |
2434736 |
atatagctactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgattcag |
2434835 |
T |
|
| Q |
191 |
tttggggaatgactaaatgggaagagtatagt |
222 |
Q |
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||||| | | ||||||||||||||||||||| |
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| T |
2434836 |
tttggagtcttactaaatgggaagagtatagt |
2434867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 2431273 - 2431482
Alignment:
| Q |
8 |
attagatatcagtataagataacacagttgcaattgatcaaggaatctgaagtattgagaatttattttttatcatagaataagtgtagctactaactga |
107 |
Q |
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| T |
2431273 |
attagatatcagtataagctaacacagttgattttgataaaggaat-----gtattgagaatttattttttatcatagaataaatgtagttactaactga |
2431367 |
T |
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| Q |
108 |
tgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaa |
207 |
Q |
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| T |
2431368 |
cgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaac |
2431467 |
T |
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| Q |
208 |
tgggaagagtatagt |
222 |
Q |
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||||||||||||||| |
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| T |
2431468 |
tgggaagagtatagt |
2431482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 1458669 - 1458796
Alignment:
| Q |
95 |
agctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttg |
194 |
Q |
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| T |
1458669 |
agctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttg |
1458768 |
T |
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| Q |
195 |
gggaatgactaaatgggaagagtatagt |
222 |
Q |
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| T |
1458769 |
gggaatgactaaatgggaagagtatagt |
1458796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 2428376 - 2428503
Alignment:
| Q |
95 |
agctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttg |
194 |
Q |
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| T |
2428376 |
agctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttg |
2428475 |
T |
|
| Q |
195 |
gggaatgactaaatgggaagagtatagt |
222 |
Q |
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||| || ||||| ||||||||||||||| |
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| T |
2428476 |
gggtattactaactgggaagagtatagt |
2428503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 2498204 - 2498125
Alignment:
| Q |
139 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagta |
218 |
Q |
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||||||||||| | ||||| |||||||| ||||||||| ||| |||||||||||||||| | ||||||||||||||| |
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| T |
2498204 |
gtgtctaaagtccttgaatcaggacatcctgattataaggaaggtgatttagtttggggattctgtaaatgggaagagta |
2498125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 2507137 - 2507058
Alignment:
| Q |
139 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagta |
218 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||| |||| |||| ||||| || ||||| ||||||||||| |
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| T |
2507137 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgggaagagta |
2507058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 2518014 - 2517935
Alignment:
| Q |
139 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagta |
218 |
Q |
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|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| | ||||| ||||||||||| |
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| T |
2518014 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagta |
2517935 |
T |
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