View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14692_low_5 (Length: 232)
Name: NF14692_low_5
Description: NF14692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14692_low_5 |
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| [»] chr4 (6 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 42761970 - 42761739
Alignment:
| Q |
1 |
ttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42761970 |
ttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacagtaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattgg |
42761871 |
T |
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| Q |
101 |
aatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatttaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42761870 |
aatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatttaatt |
42761771 |
T |
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| Q |
201 |
tttaaatacgtccataacaccaagtaattttt |
232 |
Q |
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|||||||||||| ||||||| ||||||||||| |
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| T |
42761770 |
tttaaatacgtcaataacacaaagtaattttt |
42761739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 42743135 - 42742912
Alignment:
| Q |
9 |
cataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattggaatgattt |
108 |
Q |
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||||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42743135 |
cataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattt |
42743036 |
T |
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| Q |
109 |
tggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaata |
208 |
Q |
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| T |
42743035 |
tggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaata |
42742936 |
T |
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| Q |
209 |
cgtccataacaccaagtaattttt |
232 |
Q |
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||| || |||||||||||||||| |
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| T |
42742935 |
tgtcaattacaccaagtaattttt |
42742912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 42752494 - 42752271
Alignment:
| Q |
9 |
cataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattggaatgattt |
108 |
Q |
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||||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42752494 |
cataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattt |
42752395 |
T |
|
| Q |
109 |
tggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaata |
208 |
Q |
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|||||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| | | ||||| ||||| |
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| T |
42752394 |
tggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaata |
42752295 |
T |
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| Q |
209 |
cgtccataacaccaagtaattttt |
232 |
Q |
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||| || |||||||||||||||| |
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| T |
42752294 |
tgtcaattacaccaagtaattttt |
42752271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42735570 - 42735801
Alignment:
| Q |
1 |
ttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattgg |
100 |
Q |
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||||||| ||||||||| | ||||||||||||||||||||| |||||| | || || | |||| ||||| | ||||||||||| |||||||||||||| |
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| T |
42735570 |
ttgatcctcataaggcacatggaaaaatattggtatgtcttgaaggtgaaaatagtaaacttgaaaagggcatagaagcttctcgagtaggtgctattgg |
42735669 |
T |
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| Q |
101 |
aatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatttaatt |
200 |
Q |
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|||||| |||| || ||| | || ||||| || || |||||| ||| ||||| |||||||| |||||| |||||| ||| |||||| || ||| |
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| T |
42735670 |
aatgatcttggttattgagagggagtcagggggagaagttatagctgatgctcacgtgcttccagcttcaaatgttaatgttaccgatggaagttacatt |
42735769 |
T |
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| Q |
201 |
tttaaatacgtccataacaccaagtaattttt |
232 |
Q |
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||||| |||| | |||| |||||||||||||| |
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| T |
42735770 |
tttaattacgccaataaaaccaagtaattttt |
42735801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 42768900 - 42768796
Alignment:
| Q |
12 |
aaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattggaatgattttgg |
111 |
Q |
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||||| || ||||||||| | || ||||||||||| |||| | ||||| ||||||||||||| ||||| || | | ||||||| ||||||||||||||| |
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| T |
42768900 |
aaggctaaaggaaaaatagttgtttgtcttcgaggcgacaatgatagaactgacaagggtgtgcaagctgctagggcaggtgctgttggaatgattttgg |
42768801 |
T |
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| Q |
112 |
ctaat |
116 |
Q |
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||||| |
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| T |
42768800 |
ctaat |
42768796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 42716486 - 42716436
Alignment:
| Q |
66 |
aagggtgtggaagcttctcgtgtaggtgctattggaatgattttggctaat |
116 |
Q |
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| T |
42716486 |
aagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
42716436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 23041281 - 23041504
Alignment:
| Q |
9 |
cataaggcaaagggaaaaatattggtatgtcttcgaggtgacattaatagagttgacaagggtgtggaagcttctcgtgtaggtgctattggaatgattt |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| | |||||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
23041281 |
cataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtaggtgctgttggaatgattt |
23041380 |
T |
|
| Q |
109 |
tggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatggagatttaatttttaaata |
208 |
Q |
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|||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| | | ||||| ||||| |
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| T |
23041381 |
tggctaatgacgaggcttcaggcggtgaaattatatctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaata |
23041480 |
T |
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| Q |
209 |
cgtccataacaccaagtaattttt |
232 |
Q |
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||| || |||||||||||||||| |
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| T |
23041481 |
tgtcaattacaccaagtaattttt |
23041504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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