View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14692_low_6 (Length: 228)
Name: NF14692_low_6
Description: NF14692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14692_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 7598707 - 7598583
Alignment:
| Q |
96 |
ctttaattaagtgtaattaatatcattcacaaaagtgtcgtcgtatttgaaatttttt-atcttaattgcaaaattatgacggtgttatcaactcaattg |
194 |
Q |
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| T |
7598707 |
ctttaattaagtgtaattaatatcattcacaaaagtgtcgtggtatttgaaatttttttatcttaattgcaaaattatgacgatgttatcaactcaattg |
7598608 |
T |
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| Q |
195 |
caaaaatgtcattttatcgcctttg |
219 |
Q |
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| T |
7598607 |
caaaaatgtcattttatcgcctttg |
7598583 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7598991 - 7598897
Alignment:
| Q |
1 |
ggatcaaaacataataagctagtgatgcatttggcttatttattttttnnnnnnntactggatatttttattcagctggttgctaaaaaacccga |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
7598991 |
ggatcaaaacataataagctagtgatgcatttggcttatttattttttaaaaaaatactggatatttttaatcagctggttgctaaaaaacccga |
7598897 |
T |
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