View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14693_high_11 (Length: 249)
Name: NF14693_high_11
Description: NF14693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14693_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 42768794 - 42768579
Alignment:
| Q |
15 |
atgaataatgggccgaacatcctttaaaatgattttgaatttgaatcatttaaagtgagtaaagtnnnnnnnnnnnnnnngaatcatgagtttagacttt |
114 |
Q |
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| T |
42768794 |
atgaataatgggccgaacatcctttaaaatgattttgaatttgaatcatttaaagtgagtaaa--agtaaaaaaaaaaaaaaacaatgagtttagacttt |
42768697 |
T |
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| Q |
115 |
tacaaactcaatttgtaatgatatatatgtactagtattttctgttttga-nnnnnnnnnnaagtaattttctattttgatttgttaatatgatattact |
213 |
Q |
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| T |
42768696 |
tacaaactcaatttgtaatgatatatatgtactagtattttctgttttgatttttttttttaagtaattttctattttgatttgttaatatgatattact |
42768597 |
T |
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| Q |
214 |
tactttacactctaaaat |
231 |
Q |
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| T |
42768596 |
tattttacactctaaaat |
42768579 |
T |
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