View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14693_high_2 (Length: 490)
Name: NF14693_high_2
Description: NF14693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14693_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8518700 - 8518488
Alignment:
| Q |
1 |
gtgagatgaaaaatcaaaccgatcagttaagaagaaaaaattaaaccaaccaatgagctatagaaaagtcataagtcaatggactatgagnnnnnnnctc |
100 |
Q |
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| T |
8518700 |
gtgagatgataaatcaaaccaatcagttaggaagaaaaaattaaacgaaccaatgagctgtagaaaagtcataagtcgatgggctaggagaaaaaa-ctc |
8518602 |
T |
|
| Q |
101 |
ataagtcaatgtcaatgtacaaccataatttttagccaatttaatcttgaaagagttggaaaagtcattataatatagatgacttagaaaacaaatgatg |
200 |
Q |
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| T |
8518601 |
ataagtcaatgtggatgtacaaccacaatttttagccaaaataatcttgaaagagttggaaaagtcattataatgtagatgatttagaaaatgaacgatg |
8518502 |
T |
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| Q |
201 |
gttattagaatatt |
214 |
Q |
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|||||| |||||| |
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| T |
8518501 |
cttattacaatatt |
8518488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8530204 - 8530012
Alignment:
| Q |
1 |
gtgagatgaaaaatcaaaccgatcagttaagaagaaaaaattaaaccaaccaatgagctatagaaaagtcataagtcaatggactatgagnnnnnnnctc |
100 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||| || ||||||||||||||||||||| |||| |||||||||||||||||| ||| || ||| |
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| T |
8530204 |
gtgagatgaaaaataaaaccaatcagttaggaaaaataaattaaaccaaccaatgagcaatagtaaagtcataagtcaatgggctagga---aaaaactc |
8530108 |
T |
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| Q |
101 |
ataagtcaatgtcaatgtacaaccataa-tttttagccaatttaatcttgaaagagttggaaaa----gtcattataatatagatgacttagaaaa |
191 |
Q |
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| T |
8530107 |
ataagtcaatgtggatgcacaaccacaattttttagccaatgtaatcctgaaagagttggaaaagtcggtcattacaatatagatgagttagaaaa |
8530012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 5088474 - 5088558
Alignment:
| Q |
234 |
ttccggtgcgaattttgacgaaagtggaatacacgtgccaaagcttcactatttccctctcccacgcgtagttacagatttttat |
318 |
Q |
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| T |
5088474 |
ttccggtgcgaattttgacgaaagtggaatacacgtggcaaagcttaactatttccctctcccacgtgtagttacagatttttat |
5088558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 5088612 - 5088681
Alignment:
| Q |
375 |
gtcatctctcaagtttgcttcgtttt-ttcaccggtgaataagaactcaagtaaaccattgtcatcctaa |
443 |
Q |
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| T |
5088612 |
gtcatctctcaagtttgcttcgttttattcaccggtgaataagaactcaagtaaaccattgtcatcctaa |
5088681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 442
Target Start/End: Complemental strand, 5916322 - 5916282
Alignment:
| Q |
403 |
caccggtgaataagaa-ctcaagtaaaccattgtcatccta |
442 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||| |
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| T |
5916322 |
cacccgtgaataagaatctcaagtaaaccattgtcatccta |
5916282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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