View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14693_low_10 (Length: 278)
Name: NF14693_low_10
Description: NF14693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14693_low_10 |
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| [»] scaffold0271 (2 HSPs) |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: scaffold0271 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 14363 - 14620
Alignment:
| Q |
9 |
aatatcaaattgacctatgcagatcaagggtatatgttacctggattacttcatattcatgtcattcatcatcatataatcataacaattcacatcaatc |
108 |
Q |
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| T |
14363 |
aatatcaaattgacctatgcagatcaagggtatatgttacctggattacttcatattcatgccattcatcatcatataatcataacaattcacatcaatc |
14462 |
T |
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| Q |
109 |
gatggatacagagcatagcaacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagctaagattct |
208 |
Q |
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| T |
14463 |
gatggatacagagcagagcaacaaaataatcaaaactcaagttgagacaactactcatgctgttttaatttaaggattaaagttgattagctaagattct |
14562 |
T |
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| Q |
209 |
ataaactacaattaaagca-ccccatcaacccaaacaacggtaacagtcatgtttgtg |
265 |
Q |
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| T |
14563 |
ataaactacaattaaagcacccccataaacccaaacaacggtaagagtcatgtttgtg |
14620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 3714 - 3748
Alignment:
| Q |
5 |
gaagaatatcaaattgacctatgcagatcaagggt |
39 |
Q |
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| T |
3714 |
gaagaatatcaaattgacctatgcagatcaagggt |
3748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 28 - 265
Target Start/End: Original strand, 1 - 239
Alignment:
| Q |
28 |
cagatcaagggtatatgttacctggattacttcatattcatgtcattcatcatcatataatcataacaattcacatcaatcgatggatacagagcatagc |
127 |
Q |
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| T |
1 |
cagatcaagggtatatgttacctggattacttcatattcatgccattcatcatcatataatcataacaattcacatcaatcgatggatacagagcagagc |
100 |
T |
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| Q |
128 |
aacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagctaagattctataaactacaattaaagca |
227 |
Q |
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| T |
101 |
aacaaaataatcaaaactcaagttgagacaactactcatgctgttttaatttaaggattaaagttgattagctaagattctataaactacaattaaagca |
200 |
T |
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| Q |
228 |
-ccccatcaacccaaacaacggtaacagtcatgtttgtg |
265 |
Q |
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| T |
201 |
cccccataaacccaaacaacggtaagagtcatgtttgtg |
239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 41415823 - 41415602
Alignment:
| Q |
9 |
aatatcaaattgacctatgca----gatcaagggtatatgttacctggattacttcatattcatgtcattcatcatcatataatcataacaattcacatc |
104 |
Q |
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| T |
41415823 |
aatatcaaattgacctaagcaagcagatcaagggtgcctgttacctggattacttcatattcatgtaattcatcatcatatattcataacaattcacatc |
41415724 |
T |
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| Q |
105 |
aatcgatggatacagagcatagcaacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagctaaga |
204 |
Q |
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||| ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||| | |
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| T |
41415723 |
aattgatggatacggagcatagcaacaaaataatcaagactcaagttaagacaactactcacgctg-tttaatttaaggatcaaagtcgattagctaata |
41415625 |
T |
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| Q |
205 |
ttctataaactacaattaaagca |
227 |
Q |
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| T |
41415624 |
ttctataatctataattaaagca |
41415602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 41417599 - 41417391
Alignment:
| Q |
9 |
aatatcaaattgacctatgcagatcaagggtatatgttacctggattacttcatattcat--gtcatt-catcatcatataat----cataacaattcac |
101 |
Q |
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||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||| |||| ||| |||| || | ||||| |||||| |
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| T |
41417599 |
aatatcaaattgacctatgcagatcaagggtgtctgtttcctggattgcttcatattcataagtcacaacatattcatgtagtttttcataa--attcac |
41417502 |
T |
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| Q |
102 |
atcaatcgatggatacagagcatagcaacaaaataatcaaaactcaagttgagacaactactcacgctgttttaatttaaggattaaagttgattagcta |
201 |
Q |
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||| || | || ||||||||||||||||||||| ||||| | ||||||||||||||||||||| | |||||||||||||||||| | || || ||||| |
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| T |
41417501 |
atccatagtggggtacagagcatagcaacaaaattatcaagagtcaagttgagacaactactcagacggttttaatttaaggattatacttaatgagcta |
41417402 |
T |
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| Q |
202 |
agattctataa |
212 |
Q |
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| T |
41417401 |
agattctataa |
41417391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 5576 - 5542
Alignment:
| Q |
5 |
gaagaatatcaaattgacctatgcagatcaagggt |
39 |
Q |
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| T |
5576 |
gaagaatatcaaattgacctatgcagatcaagggt |
5542 |
T |
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