View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14693_low_3 (Length: 379)
Name: NF14693_low_3
Description: NF14693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14693_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 143 - 366
Target Start/End: Complemental strand, 45866328 - 45866108
Alignment:
| Q |
143 |
gtctttaagttcaaaaacatatggtgtgtgtatttggagtttgattcttgattttcttaagctatagttttcaaattctgtgtttttgcttcagcgaagt |
242 |
Q |
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| T |
45866328 |
gtctttaagttcaaaaacatatggtgtgtgtatttggagtttgattcttgattttcttaagctatagttttcaaattctgtgtttttgcttcagcgaagt |
45866229 |
T |
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| Q |
243 |
cttggttgattaaatatgcttatnnnnnnnnnnnnnttcttcaatatgttgcagttagaagagaaatagaaattttaaaaatgttcatgcatcatcacgt |
342 |
Q |
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| T |
45866228 |
cttggttgattaaatatgcttataaaaaaaaaaaa---cttcaatatgttgcagttagaagagaaatagaaattttaaaaatgttcatgcatcatcacgt |
45866132 |
T |
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| Q |
343 |
catacgcctttatgaggttgtaga |
366 |
Q |
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| T |
45866131 |
tatacgcctttatgaggttgtaga |
45866108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 45866461 - 45866377
Alignment:
| Q |
10 |
agatgaatatcatgaaaatggaagaaaaaggtcttgatcctttatataccaatgactcatactccctattgaattgcaggacttg |
94 |
Q |
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| T |
45866461 |
agatgaatatcatgaaaatggaagaaaaaggtcttgatcctttatataccaatgactcatactccctattgaattgcaggacttg |
45866377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 363
Target Start/End: Complemental strand, 4055076 - 4054866
Alignment:
| Q |
151 |
gttcaaaaacatatggtgtgtgtatttggagtttgattcttgattttcttaagctatagttttcaaattctgtgtttttgcttcagcgaagtcttggttg |
250 |
Q |
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| T |
4055076 |
gttcaaaaacatattgtgtgtgtttttggatattgataattgattttcttaagctatagttttcaaattctgtgtttttgctgcagccaagtcttgatcg |
4054977 |
T |
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| Q |
251 |
attaaatatgcttatnnnnnnnnnnnnnttcttcaatatgttgcagttagaagagaaatagaaattttaaaaatgttcatgcatcatcacgtcatacgcc |
350 |
Q |
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| T |
4054976 |
attaaatatgctta--cagtatttttttttcttcaatctgttgcagtgagaagagaaattaagattttaagattgttcatgcaccatcacatcatacgcc |
4054879 |
T |
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| Q |
351 |
tttatgaggttgt |
363 |
Q |
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| T |
4054878 |
tttatgaggttgt |
4054866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 17404113 - 17404200
Alignment:
| Q |
279 |
ttcttcaatatgttgcagttagaagagaaatagaaattttaaaaatgttcatgcatcatcacgtcatacgcctttatgaggttgtaga |
366 |
Q |
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| T |
17404113 |
ttcttcaatttgttgcagttagaagggaaataaaaattttaagattgttcatgcatcaccacattatacgcctttacgaggttgtaga |
17404200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 17403855 - 17403920
Alignment:
| Q |
27 |
atggaagaaaaaggtcttgatcctttatataccaatgactcatactccctattgaattgcaggact |
92 |
Q |
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| T |
17403855 |
atggaagaaaaaggtttggattcttcgcataccaatgactcatactccctatcgaattgcaggact |
17403920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 17404023 - 17404070
Alignment:
| Q |
190 |
ttgattttcttaagctatagttttcaaattctgtgtttttgcttcagc |
237 |
Q |
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| T |
17404023 |
ttgattttcgtaagctatagttttcaaattctgtacttttgcttcagc |
17404070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 17966988 - 17966916
Alignment:
| Q |
192 |
gattttcttaagctatagttttcaaattctgtgtttttgcttcagcgaagtcttggttgattaaatatgctta |
264 |
Q |
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| T |
17966988 |
gattttcttaagcagtagttttcaaaatccgtgcttttgcatcggttaagtcttggttgattatatatgctta |
17966916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 17966875 - 17966828
Alignment:
| Q |
319 |
aaaaatgttcatgcatcatcacgtcatacgcctttatgaggttgtaga |
366 |
Q |
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| T |
17966875 |
aaaattgttcatgcatcatcacattatacgactttatgaggttgtaga |
17966828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 366
Target Start/End: Original strand, 17967847 - 17967933
Alignment:
| Q |
279 |
ttcttcaatatgttgcagttagaagagaaatagaaattttaaaaatgttcatgcatcatcacgtcatacgcctttatgaggttgtaga |
366 |
Q |
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| T |
17967847 |
ttcttcaatctgttgcagtgagaagagaaattaaccttttaaaaatatgcatgcatcatcacat-gtacgcctttataaggttctaga |
17967933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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