View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14693_low_6 (Length: 328)
Name: NF14693_low_6
Description: NF14693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14693_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 34668024 - 34668314
Alignment:
| Q |
12 |
atgctataactctcaatatgatacaagagaaaaataaatgatgcacggtttccacttctccgcaccagttacacacatctgagcctccttagtaatgatc |
111 |
Q |
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| T |
34668024 |
atgccataactctcaatatgatacaagagaaaaataaatgatgcacgatttccacttctccgcaccagttacacacatctgagcctcttgagtaatgatc |
34668123 |
T |
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| Q |
112 |
ccacgagccaccatattagctttggttgacaaccttttacggagaaatagtgaaattgatgaaatttaattagtttggataacgaatttgaataaaacag |
211 |
Q |
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| T |
34668124 |
ccacgagccaccatattagctttggttgacaaccttttacggagaaatggtgaaattgatgaaatttaattagtttggataacgaatttgaataatacag |
34668223 |
T |
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| Q |
212 |
actcaactgtttttcactcctacccttatcccacaaacatgctatatcccatatatttcacttaagatagcaatacataaaagtataatatgtaatgaaa |
311 |
Q |
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| T |
34668224 |
actcaactgttgttcactcctacccttatcccacaaacatgctatatcccatatatttca----------caatacataaaagtataatatgtaatgaaa |
34668313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 13797703 - 13797566
Alignment:
| Q |
21 |
ctctcaatatgatacaagagaaaaataaatgatgcacggtttccacttctccgcacc-agttacacacatctgagcctccttagtaatgatcccacgagc |
119 |
Q |
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| T |
13797703 |
ctctgaatatggtacaagagaagaataaatgttgcgccgtttccacttttccgcacccagtcacgcacatctgagcctcctgagagaggatcccacgagc |
13797604 |
T |
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| Q |
120 |
caccatattagctttggttgacaaccttttacggagaa |
157 |
Q |
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| T |
13797603 |
ccccagattctccttggttggcaacctgttacggagaa |
13797566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 10150278 - 10150362
Alignment:
| Q |
38 |
gagaaaaataaatgatgcacggtttccacttctccgcacc-agttacacacatctgagcctccttagtaatgatcccacgagcca |
121 |
Q |
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|||||||||||||| ||| ||||||||||||||||||| ||| |||||||| ||||| |||| |||||||||||||||||||| |
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| T |
10150278 |
gagaaaaataaatgttgcgttgtttccacttctccgcacccagtcacacacatatgagcttcctaagtaatgatcccacgagcca |
10150362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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