View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14693_low_7 (Length: 315)
Name: NF14693_low_7
Description: NF14693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14693_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 10096316 - 10096035
Alignment:
| Q |
17 |
ctatatgctagcgaaaaccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatg |
116 |
Q |
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| T |
10096316 |
ctatatgctagcgaaaaccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatg |
10096217 |
T |
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| Q |
117 |
cggtttgacaacgtggactttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcag |
216 |
Q |
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| T |
10096216 |
cggtttgacaacgtggactttgtggtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcag |
10096117 |
T |
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| Q |
217 |
catgtcaggatatgatttcctcctacttatatatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
302 |
Q |
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| T |
10096116 |
catgtcaggatatgatttcctcctact----tatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
10096035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 10035948 - 10035667
Alignment:
| Q |
17 |
ctatatgctagcgaaaaccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatg |
116 |
Q |
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| T |
10035948 |
ctatatgctagcgaaaaccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatg |
10035849 |
T |
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| Q |
117 |
cggtttgacaacgtggactttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcag |
216 |
Q |
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| T |
10035848 |
cggtttgacaacgtggactttgtggtcgactcaaaaattacggctgatgcagttatctcgagaagaagtgatgttacagagttcggccaaattattgcaa |
10035749 |
T |
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| Q |
217 |
catgtcaggatatgatttcctcctacttatatatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
302 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10035748 |
tatgtcaggatatgatttcctcctact----tatacatttgaatttcaatttcagaatataaacatgttgaatgcatcaattaaat |
10035667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 49077121 - 49077326
Alignment:
| Q |
18 |
tatatgctagcgaaaaccatgagcttctcacctatggtttctgtcaatataggagaagctcttactctctttcatgcaccacaatggttacaggacatgc |
117 |
Q |
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|||||| |||| || ||||||| | ||||||| ||||| ||||||| |||| ||||| || |||| |||||||| ||||||| || ||||||| |
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| T |
49077121 |
tatatgttagcaaagaccatgaacatctcacccttggttgctgtcaacgtaggggaagcactagctctttttcatgctttacaatggctatgcgacatgc |
49077220 |
T |
|
| Q |
118 |
ggtttgacaacgtggactttgtagtcgactcaaaaattacggctgatgcagttatctcgagaagaagtg-atgttacagagttcggccaaattattgcag |
216 |
Q |
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| |||||||||||||| ||||||||||||||||||||||| || |||| | | |||| | ||||| ||||||| |||||||||||||| ||||||| |
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| T |
49077221 |
gttttgacaacgtggattttgtagtcgactcaaaaattacagcagatgatatcttatcga-acaaagtgaatgttactgagttcggccaaataattgcag |
49077319 |
T |
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| Q |
217 |
catgtca |
223 |
Q |
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||||||| |
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| T |
49077320 |
catgtca |
49077326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 29358546 - 29358584
Alignment:
| Q |
186 |
gatgttacagagttcggccaaattattgcagcatgtcag |
224 |
Q |
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| T |
29358546 |
gatgttactgagttcggccaaataattgcagcatgtcag |
29358584 |
T |
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