View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14693_low_9 (Length: 292)
Name: NF14693_low_9
Description: NF14693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14693_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 46873341 - 46873078
Alignment:
| Q |
18 |
tgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattcttt |
117 |
Q |
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| T |
46873341 |
tgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattcttt |
46873242 |
T |
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| Q |
118 |
ccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacact |
217 |
Q |
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| T |
46873241 |
ccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacact |
46873142 |
T |
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| Q |
218 |
tatctccatagggacatttctccccattgcaatacttcttgcacaggttcatcttgtttatgat |
281 |
Q |
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| T |
46873141 |
tatctccatagggacatttctccccattgcaatacttcttgcacagtttcatcttgtttatgat |
46873078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 46890751 - 46890593
Alignment:
| Q |
20 |
aacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttcc |
119 |
Q |
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| T |
46890751 |
aacaaaataaagcaatagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaagagacagttcattcc |
46890652 |
T |
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| Q |
120 |
aaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
178 |
Q |
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| T |
46890651 |
aaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 46890502 - 46890412
Alignment:
| Q |
179 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacaggttcat |
269 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacagtttcat |
46890412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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