View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14694_high_17 (Length: 247)

Name: NF14694_high_17
Description: NF14694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14694_high_17
NF14694_high_17
[»] chr5 (2 HSPs)
chr5 (14-247)||(453788-454019)
chr5 (14-115)||(469745-469846)
[»] chr7 (8 HSPs)
chr7 (45-116)||(20062386-20062457)
chr7 (45-116)||(20167907-20167978)
chr7 (45-116)||(20289422-20289493)
chr7 (42-116)||(19939303-19939377)
chr7 (42-116)||(19970442-19970516)
chr7 (45-116)||(20294828-20294899)
chr7 (45-116)||(20303869-20303940)
chr7 (45-115)||(20264188-20264258)
[»] chr1 (3 HSPs)
chr1 (39-116)||(47627662-47627739)
chr1 (24-116)||(47619490-47619582)
chr1 (15-115)||(47698603-47698703)
[»] chr6 (5 HSPs)
chr6 (42-116)||(21968030-21968104)
chr6 (42-116)||(22085913-22085987)
chr6 (63-116)||(22207071-22207124)
chr6 (63-115)||(18995539-18995591)
chr6 (27-115)||(22001839-22001927)
[»] scaffold0074 (1 HSPs)
scaffold0074 (63-115)||(49868-49920)
[»] scaffold0007 (1 HSPs)
scaffold0007 (63-115)||(7402-7454)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 453788 - 454019
Alignment:
Q  14 ctttgcactaattatctctataattatcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataacca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  453788 ctttgcactaattatctctataattatcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataacca 453887  T
Q  114 ctggaaagnnnnnnnnngtcgattttaaatatataaagtgaaaattggacagatataatcaaacttatgatgtggtgtagaacattttgaatcatatcta 213  Q
    |||||||          ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  453888 ctggaaa--aaaaaaaagtccattttaaatatataaagtgaaaattggacagatataatcaaacttatgatgtggtgtagaacattttgaatcatatcta 453985  T
Q  214 ccaaaaagtatttgataatactatgggactcatt 247  Q
    ||||||||||||||||||||||||||||||||||    
T  453986 ccaaaaagtatttgataatactatgggactcatt 454019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 469745 - 469846
Alignment:
Q  14 ctttgcactaattatctctataattatcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataacca 113  Q
    |||| |||||| |||||| | |||||| |||||||| || |||||||| ||||| || ||| | ||||| |||||||||||||| | |||||||||||||    
T  469745 ctttccactaactatctcaagaattataactccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataacca 469844  T
Q  114 ct 115  Q
    ||    
T  469845 ct 469846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 20062386 - 20062457
Alignment:
Q  45 ccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    ||||||||||| ||||||||||| |||||| || |||| |||||||| ||||| | ||||||||||||||||    
T  20062386 ccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcgtattcaggagacatataaccactg 20062457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 20167907 - 20167978
Alignment:
Q  45 ccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    ||||||||||||||||||||||| |||||| |  |||| ||||||||||| |||| ||||||||| ||||||    
T  20167907 ccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccactg 20167978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 20289493 - 20289422
Alignment:
Q  45 ccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    ||||||||||| ||||||||||| |||||| |  |||| |||||||| ||||||| ||| ||||||||||||    
T  20289493 ccaaagctaaagacatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatataaccactg 20289422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 19939377 - 19939303
Alignment:
Q  42 actccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    |||||||||||||| ||||| ||||| || ||| |  |||| |||||||||||||| | ||||||||||||||||    
T  19939377 actccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccactg 19939303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 19970516 - 19970442
Alignment:
Q  42 actccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    |||||||||||||| ||||| ||||| || ||| |  |||| |||||||||||||| | ||||||||||||||||    
T  19970516 actccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccactg 19970442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 20294899 - 20294828
Alignment:
Q  45 ccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    ||||||||||| ||||||||||| |||||| |   ||| |||||||||||||| | ||||||||| ||||||    
T  20294899 ccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactg 20294828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 20303940 - 20303869
Alignment:
Q  45 ccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    ||||||||||| ||||||||||| |||||| || ||||  ||||||| ||||| | ||||||||| ||||||    
T  20303940 ccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccactg 20303869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 20264258 - 20264188
Alignment:
Q  45 ccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccact 115  Q
    ||||||||||| |||||||| || |||||| |   ||| |||||||||||||||| |||||| ||||||||    
T  20264258 ccaaagctaaaaacatctgacttctctgaaaataatccttgcattgcatattcgggagacatgtaaccact 20264188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 47627739 - 47627662
Alignment:
Q  39 atcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    ||||||||||| ||||| ||||| || || |||||| | |||||||||||||||||||| | |||||| |||||||||    
T  47627739 atcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccggagacatgtaaccactg 47627662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 47619582 - 47619490
Alignment:
Q  24 attatctctataattatcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    ||||||||||| || || |||||||| ||||| || ||||||||||| ||  | | |||| ||||||||||||| | ||||||||||||||||    
T  47619582 attatctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactg 47619490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 47698703 - 47698603
Alignment:
Q  15 tttgcactaattatctctataattatcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccac 114  Q
    |||| |||||||||||| | || ||| |||||||| || || || || ||||||||||||   ||||||||||||||||||||   ||||||||| ||||    
T  47698703 tttgaactaattatctccaaaactatgactccaaaactgaaaacgtccgatttttctgaaagttgtccatgcattgcatattcctgagacatatagccac 47698604  T
Q  115 t 115  Q
    |    
T  47698603 t 47698603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 21968030 - 21968104
Alignment:
Q  42 actccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    |||||||| ||| | |||||||||||||| ||| | |||| |  |||||||||||| | ||||||||||||||||    
T  21968030 actccaaaactataaacatctgatttttcagaaaattgtcaaaacattgcatattctggagacatataaccactg 21968104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 22085913 - 22085987
Alignment:
Q  42 actccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    |||||||| ||| | |||||||||||||| ||| | ||||||  |||||||||||| |  |||||||||||||||    
T  22085913 actccaaaactataaacatctgatttttcagaaaattgtccaaacattgcatattctggcgacatataaccactg 22085987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 22207124 - 22207071
Alignment:
Q  63 gatttttctgaataatgtccatgcattgcatattcggaagacatataaccactg 116  Q
    |||||||| ||| | |||||| ||||||||||||| | ||||||||||||||||    
T  22207124 gatttttcagaaaattgtccaagcattgcatattctggagacatataaccactg 22207071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 18995539 - 18995591
Alignment:
Q  63 gatttttctgaataatgtccatgcattgcatattcggaagacatataaccact 115  Q
    |||||||| ||| | |||||| ||||||||||||| | |||||||||||||||    
T  18995539 gatttttcagaaaattgtccaagcattgcatattccggagacatataaccact 18995591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 22001839 - 22001927
Alignment:
Q  27 atctctataattatcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccact 115  Q
    |||||||| || || |||||||| ||| | | |||||||||||| ||| | |||| |  |||||||||||| | |||||||||||||||    
T  22001839 atctctatgatcatgactccaaaactataaatatctgatttttcagaaaattgtctaaacattgcatattctggagacatataaccact 22001927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 49920 - 49868
Alignment:
Q  63 gatttttctgaataatgtccatgcattgcatattcggaagacatataaccact 115  Q
    |||||||| ||| | |||||| ||||||||||||| | |||||||||||||||    
T  49920 gatttttcagaaaattgtccaagcattgcatattccggagacatataaccact 49868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 7454 - 7402
Alignment:
Q  63 gatttttctgaataatgtccatgcattgcatattcggaagacatataaccact 115  Q
    |||||||| ||| | |||||| ||||||||||||| | |||||||||||||||    
T  7454 gatttttcagaaaattgtccaagcattgcatattccggagacatataaccact 7402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University