View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14694_high_8 (Length: 339)

Name: NF14694_high_8
Description: NF14694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14694_high_8
NF14694_high_8
[»] chr6 (11 HSPs)
chr6 (17-331)||(33387175-33387487)
chr6 (195-307)||(33261811-33261923)
chr6 (202-300)||(33282144-33282242)
chr6 (202-300)||(33397945-33398043)
chr6 (195-300)||(33283867-33283972)
chr6 (202-300)||(33408855-33408953)
chr6 (17-77)||(33261641-33261701)
chr6 (108-182)||(33261714-33261788)
chr6 (57-95)||(33282071-33282109)
chr6 (108-182)||(33283770-33283844)
chr6 (113-182)||(33358066-33358135)
[»] scaffold0428 (4 HSPs)
scaffold0428 (202-300)||(12010-12108)
scaffold0428 (226-300)||(5615-5689)
scaffold0428 (57-95)||(12143-12181)
scaffold0428 (108-182)||(5533-5607)
[»] chr2 (2 HSPs)
chr2 (108-300)||(17441586-17441759)
chr2 (64-96)||(17441755-17441787)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 33387175 - 33387487
Alignment:
Q  17 gttgttgtctatgaaacacagacacagaaatcgaaaacgacacggagattacaacctaacacaaatttaaaacccccaccaaacggcacatccacaccgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387175 gttgttgtctatgaaacacagacacagaaatcgaaaacgacacggagattacaacctaacacaaatttaaaacccccaccaaacggcacatccacaccgc 33387274  T
Q  117 aaattataaaattcagtataaattgaaaatcaaacaaacatagtctcacttctgccaacaaaatcaaggnnnnnnnntatgaatgatataaagttagcaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  33387275 aaattataaaattcagtataaattgaaaatcaaacaaacatagtctcacttctgccaacaaaatcaaggaaaaaaa--atgaatgatataaagttagcaa 33387372  T
Q  217 gattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttgaattttttgtgatccat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387373 gattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttgaattttttgtgatccat 33387472  T
Q  317 ctgttgtttcttctc 331  Q
    |||||||||||||||    
T  33387473 ctgttgtttcttctc 33387487  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 33261811 - 33261923
Alignment:
Q  195 atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact 294  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||    
T  33261811 atgaataatataaaattaacaagattcttttgaattatcttcagtacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatcact 33261910  T
Q  295 tgttgaatttttt 307  Q
    |||||| ||||||    
T  33261911 tgttgactttttt 33261923  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 33282144 - 33282242
Alignment:
Q  202 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 300  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  33282144 atataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga 33282242  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 33397945 - 33398043
Alignment:
Q  202 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 300  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  33397945 atataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttgcggtcaacttgttatcacttgttga 33398043  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 33283867 - 33283972
Alignment:
Q  195 atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact 294  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  33283867 atgaataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcact 33283966  T
Q  295 tgttga 300  Q
    | ||||    
T  33283967 tcttga 33283972  T

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Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 33408855 - 33408953
Alignment:
Q  202 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 300  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||  |||||||||||||||||||    
T  33408855 atataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttccggtcgacttgttatcacttgttga 33408953  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 33261641 - 33261701
Alignment:
Q  17 gttgttgtctatgaaacacagacacagaaatcgaaaacgacacggagattacaacctaaca 77  Q
    |||||||||||||||||||||||||||| | |||||||| ||  || ||||||||||||||    
T  33261641 gttgttgtctatgaaacacagacacagacaccgaaaacggcaaagaaattacaacctaaca 33261701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 33261714 - 33261788
Alignment:
Q  108 ccacaccgcaaattataaaattcagtataaattgaaaatcaaacaaacatagtctcacttctgccaacaaaatca 182  Q
    |||| ||| ||||||||||||||||| |||| || || ||| ||||| | ||| |||||||||||||||||||||    
T  33261714 ccaccccgtaaattataaaattcagtctaaaatgcaagtcagacaaagaaagtgtcacttctgccaacaaaatca 33261788  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 33282071 - 33282109
Alignment:
Q  57 cacggagattacaacctaacacaaatttaaaacccccac 95  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  33282071 cacggaaattacaacctaacacaaatttaaaacccccac 33282109  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 33283770 - 33283844
Alignment:
Q  108 ccacaccgcaaattataaaattcagtataaattgaaaatcaaacaaacatagtctcacttctgccaacaaaatca 182  Q
    |||| ||| ||||||||||||||||| |||| || || ||| ||||| | ||| |||||||||||||||||||||    
T  33283770 ccaccccgtaaattataaaattcagtctaaaatgcaagtcagacaaagaaagtgtcacttctgccaacaaaatca 33283844  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 33358066 - 33358135
Alignment:
Q  113 ccgcaaattataaaattcagtataaattgaaaatcaaacaaacatagtctcacttctgccaacaaaatca 182  Q
    ||||||||||||||||||||| |||| || ||| || | |||   |||| ||||||||||||||||||||    
T  33358066 ccgcaaattataaaattcagtctaaaatgcaaagcagaaaaagtaagtcgcacttctgccaacaaaatca 33358135  T

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Target: scaffold0428 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 12108 - 12010
Alignment:
Q  202 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 300  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12108 atataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga 12010  T

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Target: scaffold0428; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 5615 - 5689
Alignment:
Q  226 gaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  5615 gaattatcttcagtacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatcacttgttga 5689  T

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Target: scaffold0428; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 12181 - 12143
Alignment:
Q  57 cacggagattacaacctaacacaaatttaaaacccccac 95  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  12181 cacggaaattacaacctaacacaaatttaaaacccccac 12143  T

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Target: scaffold0428; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 5533 - 5607
Alignment:
Q  108 ccacaccgcaaattataaaattcagtataaattgaaaatcaaacaaacatagtctcacttctgccaacaaaatca 182  Q
    |||| ||| ||||||||||||||||| |||| || || ||| ||||| | ||| | |||||||||||||||||||    
T  5533 ccaccccgtaaattataaaattcagtctaaaatgcaagtcagacaaagaaagtgtgacttctgccaacaaaatca 5607  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 300
Target Start/End: Complemental strand, 17441759 - 17441586
Alignment:
Q  108 ccacaccgcaaattataaaattcagtataaattgaaaatcaaacaaacatagtctcacttctgccaacaaaatcaaggnnnnnnnntatgaatgatataa 207  Q
    |||| ||||||||||||||||||||| |||| || |||||| ||||||| |||||||||| |||||||||||||| ||                    ||    
T  17441759 ccaccccgcaaattataaaattcagtctaaaatgcaaatcagacaaacaaagtctcacttgtgccaacaaaatcatgga-------------------aa 17441679  T
Q  208 agttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 300  Q
    ||||| ||||||| ||||||||||||||| |||||| ||||||  ||||||||||||||||||| |||| ||| | |||||||||||||||||    
T  17441678 agttaacaagatttttttgaattatcttccgtacctttgcttgttgttgacaacagagattgttgttgcagttgatttgttatcacttgttga 17441586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 17441787 - 17441755
Alignment:
Q  64 attacaacctaacacaaatttaaaacccccacc 96  Q
    ||||||||| |||||||||||||||||||||||    
T  17441787 attacaaccaaacacaaatttaaaacccccacc 17441755  T

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