View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14694_low_1 (Length: 481)

Name: NF14694_low_1
Description: NF14694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14694_low_1
NF14694_low_1
[»] chr5 (2 HSPs)
chr5 (39-481)||(454222-454664)
chr5 (358-481)||(470066-470189)
[»] chr1 (5 HSPs)
chr1 (296-433)||(47698389-47698526)
chr1 (360-438)||(47574620-47574698)
chr1 (360-436)||(47584322-47584398)
chr1 (360-447)||(47607319-47607406)
chr1 (356-433)||(47636542-47636619)
[»] chr8 (3 HSPs)
chr8 (39-122)||(20101045-20101128)
chr8 (365-447)||(10401677-10401759)
chr8 (43-100)||(19783051-19783108)
[»] scaffold0007 (1 HSPs)
scaffold0007 (408-478)||(7122-7192)
[»] chr6 (6 HSPs)
chr6 (365-447)||(20233232-20233314)
chr6 (408-478)||(20236134-20236204)
chr6 (365-447)||(22127216-22127298)
chr6 (408-478)||(22130118-22130188)
chr6 (408-478)||(18995812-18995882)
chr6 (359-447)||(21968258-21968346)
[»] chr3 (3 HSPs)
chr3 (354-438)||(1077344-1077428)
chr3 (354-438)||(1050441-1050525)
chr3 (354-438)||(1091184-1091268)
[»] chr4 (1 HSPs)
chr4 (39-122)||(28781293-28781376)
[»] chr7 (1 HSPs)
chr7 (360-405)||(20231542-20231587)


Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 39 - 481
Target Start/End: Original strand, 454222 - 454664
Alignment:
Q  39 tatttgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggtgtcgctgagccaaatataggctaaacgtgcgtccagct 138  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| | ||||||  || |||||||||| |||||||| |||    
T  454222 tatttgtagcttcactagaaacatggatttctaccgtggttttggctagatgtgaaaaaggtgccactgagctgaacataggctaaatgtgcgtccggct 454321  T
Q  139 agtggtaagccacaaatgttccaaaaactctattagtcttatatgaaattgtaggatccactaaatgaaagttaaaaattcaaattagattctaccatgt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  454322 agtggtaagccacaaatgttccaaaaactctattagtcttatatgagtttgttagatccactaaatgaaagttaaaaattcaaattagattctaccatgt 454421  T
Q  239 gctttcaattagatagtaacaagaaaaactaaagaatatagcattcaagtttgcaaatacttactaagttccagcaattctcttagtatttccttgatgt 338  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454422 gctttcaattagatagtaacaagaaaaactaaggaatatagcattcaagtttgcaaatacttactaagttccagcaattctcttagtatttccttgatgt 454521  T
Q  339 tcatctatatcaatcatttttgccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454522 tcatctatatcaatcatttttgccataccaaagtctgatatttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 454621  T
Q  439 ctttaagtcttgattgatcatgtaagtaatgaatccctcgtgc 481  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  454622 ctttaagtcttgattgatcatgtaagtaatgaatccctcgtgc 454664  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 358 - 481
Target Start/End: Original strand, 470066 - 470189
Alignment:
Q  358 ttgccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtcttgattgatc 457  Q
    |||||| |||||| ||||||||||||| |||||| || | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |  ||    
T  470066 ttgccaaaccaaaatctgatatttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtatgactttaagtcttgaatactc 470165  T
Q  458 atgtaagtaatgaatccctcgtgc 481  Q
    |||||||||| |||| ||||||||    
T  470166 atgtaagtaaagaattcctcgtgc 470189  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 433
Target Start/End: Complemental strand, 47698526 - 47698389
Alignment:
Q  296 tacttactaagttccagcaattctcttagtatttccttgatgttcatctatatcaatcatttttgccataccaaagtctgatatttttgaattcatattc 395  Q
    ||||||||| |||||| ||||||| || ||| ||||| ||| || ||||| | | | |||| ||||||| || || || |||||||| | |||||| ||     
T  47698526 tacttactatgttccaacaattctatttgtacttcctcgatcttgatctagagccaccattcttgccatgccgaaatcagatattttaggattcatgtta 47698427  T
Q  396 ttatctaacaatatattgctaggtttgagatcacgatg 433  Q
    | ||||||||||| ||| ||||||||||||||||||||    
T  47698426 tcatctaacaatacattactaggtttgagatcacgatg 47698389  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 438
Target Start/End: Complemental strand, 47574698 - 47574620
Alignment:
Q  360 gccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 438  Q
    ||||| ||||| ||||||||||||| |||||||||   ||||||||  | || ||||||||| ||||||||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatga 47574620  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 436
Target Start/End: Complemental strand, 47584398 - 47584322
Alignment:
Q  360 gccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtat 436  Q
    ||||| ||||| |||||||||||||  ||||| ||  ||||||| || | |||||||||||| ||||||||||||||    
T  47584398 gccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtat 47584322  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 447
Target Start/End: Complemental strand, 47607406 - 47607319
Alignment:
Q  360 gccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 447  Q
    ||||| ||||| ||||| ||||| | ||||||||  | |||||| || ||||| |||||||| |||||||||||||| ||||| ||||    
T  47607406 gccatgccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataacttttagtc 47607319  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 433
Target Start/End: Complemental strand, 47636619 - 47636542
Alignment:
Q  356 ttttgccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatg 433  Q
    ||||||||| |||||||| || ||||||| ||||||||    ||| |||||||| ||||||| ||| |||||||||||    
T  47636619 ttttgccatgccaaagtccgagatttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatg 47636542  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 20101045 - 20101128
Alignment:
Q  39 tatttgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggtgtcgctgagccaaatataggct 122  Q
    |||||||||||||||||||||| || |||| |   ||||||||||  |||||||||||||||  |||||||||||| |||||||    
T  20101045 tatttgtagcttcactagaaacgtgaatttatgccgtggttttgggcagatgtgaaaaaggtaccgctgagccaaacataggct 20101128  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 447
Target Start/End: Original strand, 10401677 - 10401759
Alignment:
Q  365 accaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 447  Q
    |||||| ||||||||||||| | ||||||| | |||||| || ||||| ||||||||||| ||||| || || ||||| ||||    
T  10401677 accaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacggtgaataactttgagtc 10401759  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 19783051 - 19783108
Alignment:
Q  43 tgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggt 100  Q
    |||||||||||||||||| || |||| ||  ||||||||||  |||||||||||||||    
T  19783051 tgtagcttcactagaaacgtgaatttgtacggtggttttgggcagatgtgaaaaaggt 19783108  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 7192 - 7122
Alignment:
Q  408 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 478  Q
    |||||||||||||||||||| |||||||| ||||| |||| ||| |||||||| || ||| ||||||||||    
T  7192 atattgctaggtttgagatcccgatgtataactttgagtcgtgaatgatcatgcaaataaagaatccctcg 7122  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 447
Target Start/End: Complemental strand, 20233314 - 20233232
Alignment:
Q  365 accaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 447  Q
    |||||| ||||||||||||| | |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  20233314 accaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 20233232  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 20236134 - 20236204
Alignment:
Q  408 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 478  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  20236134 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 20236204  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 447
Target Start/End: Complemental strand, 22127298 - 22127216
Alignment:
Q  365 accaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 447  Q
    |||||| ||||||||||||| | |||| |||| |||||| || ||||| ||||||||||| |||||||| || ||||| ||||    
T  22127298 accaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaataactttgagtc 22127216  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 22130118 - 22130188
Alignment:
Q  408 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 478  Q
    |||||||||||||||||||| |||||||| ||||| || | ||| |||||||| || ||| ||||||||||    
T  22130118 atattgctaggtttgagatcccgatgtataactttgagccgtgaatgatcatgcaaataaagaatccctcg 22130188  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 18995812 - 18995882
Alignment:
Q  408 atattgctaggtttgagatcacgatgtatgactttaagtcttgattgatcatgtaagtaatgaatccctcg 478  Q
    |||||||||||||||||||| |||||||| ||||| ||||  || || ||||| || ||| ||||||||||    
T  18995812 atattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaataaagaatccctcg 18995882  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 447
Target Start/End: Original strand, 21968258 - 21968346
Alignment:
Q  359 tgccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatgactttaagtc 447  Q
    ||||| |||||| ||||| ||||| | | ||||||| | |||||| |  ||||| |||||||||||||| |||||||| ||||| ||||    
T  21968258 tgccaaaccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtc 21968346  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 1077428 - 1077344
Alignment:
Q  354 atttttgccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 438  Q
    ||||||||||  ||||| ||||||||||||| ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1077428 atttttgccaagccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1077344  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 1050525 - 1050441
Alignment:
Q  354 atttttgccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 438  Q
    ||||||||||  ||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1050525 atttttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1050441  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 1091268 - 1091184
Alignment:
Q  354 atttttgccataccaaagtctgatatttttgaattcatattcttatctaacaatatattgctaggtttgagatcacgatgtatga 438  Q
    ||||||||||  ||||| ||||||||||| | ||||||||  || ||||| || ||||| || ||||| ||||| ||||||||||    
T  1091268 atttttgccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatgtatga 1091184  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 28781376 - 28781293
Alignment:
Q  39 tatttgtagcttcactagaaacatggatttctattgtggttttggctagatgtgaaaaaggtgtcgctgagccaaatataggct 122  Q
    ||||| |||||||||||||||| || |||| |   ||||||||||  |||||||||||||||   ||||||||||| |||||||    
T  28781376 tatttttagcttcactagaaacgtgaatttgtgccgtggttttgggcagatgtgaaaaaggtacggctgagccaaacataggct 28781293  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 20231587 - 20231542
Alignment:
Q  360 gccataccaaagtctgatatttttgaattcatattcttatctaaca 405  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||||    
T  20231587 gccataccaaagtctgatatttttggattcaacttctcatctaaca 20231542  T

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