View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14694_low_16 (Length: 251)
Name: NF14694_low_16
Description: NF14694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14694_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 32176656 - 32176879
Alignment:
| Q |
21 |
actttgcatttatcttctgatctccatgttgtggccaacccaaaattggtacaccattcaaagctgcttctgtaattgagttccatccacaatgactcac |
120 |
Q |
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| T |
32176656 |
actttgcatttatcttctgatctccatgttgtggccaacccaaaattggtacaccattcaaagctgcttctgtaattgagttccatccacaatgactcac |
32176755 |
T |
|
| Q |
121 |
aaaccctccaacacttttatgactcaaaatctcactttgatccacccattctttaaccaccaaccctctatccttcattttctccaccaactcaactcct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32176756 |
aaaccctccaacacttttatgactcaaaatctcactttgatccacccattctttaaccaccaaccctctatccttcattttctccaccaactcaacccct |
32176855 |
T |
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| Q |
221 |
aaaacctcatctaaccccacttct |
244 |
Q |
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|||||||||||||||||||||||| |
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| T |
32176856 |
aaaacctcatctaaccccacttct |
32176879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 32183827 - 32184046
Alignment:
| Q |
25 |
tgcatttatcttctgatctccatgttgtggccaacccaaaattggtacaccattcaaagctgcttctgtaattgagttccatccacaatgactcacaaac |
124 |
Q |
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| T |
32183827 |
tgcatttatcctttgatcaccatgttgtggccaagccaatattggcacaccattcaaagctgcctccataattgagttccatccacaatgactcacaaat |
32183926 |
T |
|
| Q |
125 |
cctccaacacttttatgactcaaaatctcactttgatccacccattctttaaccaccaaccctctatccttcattttctccaccaactcaactcctaaaa |
224 |
Q |
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| T |
32183927 |
cctcctatacttttgtgactcaaaatctcactttgatccacccattccttaactaccaaaccttttttcttcattctctctaccaactcaactcctaaaa |
32184026 |
T |
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| Q |
225 |
cctcatctaaccccacttct |
244 |
Q |
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||||||||||||| |||||| |
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| T |
32184027 |
cctcatctaacccaacttct |
32184046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 33401800 - 33401837
Alignment:
| Q |
96 |
ttgagttccatccacaatgactcacaaaccctccaaca |
133 |
Q |
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| T |
33401800 |
ttgagttccatccacaatgagtcataaaccctccaaca |
33401837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 21004310 - 21004187
Alignment:
| Q |
111 |
aatgactcacaaaccctccaacacttttatgactcaaaatctcactttgatccacccattctttaaccaccaaccctctatccttcattttctccaccaa |
210 |
Q |
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||||||||| |||||| || |||||||| ||| |||||||||||||| |||| |||||| ||||||||||| | ||||||||| |||| ||||| |
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| T |
21004310 |
aatgactcataaacccacccacacttttgtgattcaaaatctcacttggatcaacccat--aaccaccaccaaccccttttccttcattctctctaccaa |
21004213 |
T |
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| Q |
211 |
ctcaactcctaaaacctcatctaacc |
236 |
Q |
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|||||| || || ||||||||||||| |
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| T |
21004212 |
ctcaacacccaatacctcatctaacc |
21004187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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