View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14694_low_4 (Length: 449)
Name: NF14694_low_4
Description: NF14694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14694_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 44244704 - 44245130
Alignment:
| Q |
14 |
ataatactttgaacttctacataggagcaatatcagttgttaaagcttcaaacattagttcaacttggattatgagacacttttcttcgattgatttcat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44244704 |
ataatactttgaacttctacataggagcaatatcagttgttaaagcttcaaacattagttcaacttggattatgaaacacttttcttcgattgatttcat |
44244803 |
T |
|
| Q |
114 |
gatgtttatataacaagatgttcccagatcttgttataannnnnnnngttaaagtatggagtattcattactgttagacgacaactaatctccatcggcg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44244804 |
gatgtttatataacaagatgttcccagatcttgttataattttttttgttaaagtatggagtattcattactgttagatgacaactaatctccatcggcg |
44244903 |
T |
|
| Q |
214 |
gacttattaggcatatagaatagatttcctcatccaactaaattttctcattttgcaatgt---ttgaatagtagggatgttgtacatttctcaatttaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44244904 |
gacttattaggcatatagaatagatttcctcatccaactaaattttctcattttgcaatgtacattgaatagtagggatgttgtacatttctcaatttaa |
44245003 |
T |
|
| Q |
311 |
atacagannnnnnnnattatagttctaaatatatctaag--tgtcttcattacgctcaaaacgataacaatggaactctacatctttacttaaaggagag |
408 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44245004 |
atacagattttttttattatagttctaaatatatctaagtatgtcttcattacgctcaaaacgataacaatggaactctacatctttacttaaaggagag |
44245103 |
T |
|
| Q |
409 |
aaatcctactccctatattggatcctg |
435 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44245104 |
aaatcctactccctatattggatcctg |
44245130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University