View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14694_low_7 (Length: 426)
Name: NF14694_low_7
Description: NF14694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14694_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 36252120 - 36252531
Alignment:
| Q |
1 |
cattctttactgatttggttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaagtctataaaacctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36252120 |
cattctttactgatttggttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaagtctataaaacctgtt |
36252219 |
T |
|
| Q |
101 |
tctatcaattcacatatttattttgttctacatctcttaattcttcggcttggacgtaatggtagagcaagtgaagtatcagcagcctagcaaatatgtg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36252220 |
tctatcaattcgcatatttattttgttatacatctcttaattcttcggcttggacgtaatggtagagcaagtgaagtatcagcagcctagctaatatgtg |
36252319 |
T |
|
| Q |
201 |
ttcctcgtcattaatatttttatcgcggtaaatatgggctcac-ggaaaattgatgactgcaataaagatgcacttgctatgctagtaccaccgtttcca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36252320 |
ttcctcgtcattaatatttttatcgcggtaaatatgggctcacgggaaaattgatgactgcaataaagatgcacttgctatgctagtaccaccgtttcct |
36252419 |
T |
|
| Q |
300 |
ttttagtattattaatttgtttatgaatgattcgtttgattgtttgacagttgtgtaggagcgaaagctacaaaatacaagcacatcatgcaaaagaatc |
399 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36252420 |
ttttagtattattaatttgtttatgaaggattcgtttgattgtttgacagttgtgtaggagcgaaagctacaaaatacaagcaaatcatgcaaaagaatc |
36252519 |
T |
|
| Q |
400 |
caagcttctgat |
411 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36252520 |
caagcttctgat |
36252531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 36225504 - 36225439
Alignment:
| Q |
19 |
ttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaa |
84 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||| |||||||||||||| || ||| ||||||||| |
|
|
| T |
36225504 |
ttaaccatcatggtaaaagagtatacaagttacacttgttcaggaaaatccagtttactatcagaa |
36225439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 36235431 - 36235496
Alignment:
| Q |
18 |
gttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaa |
84 |
Q |
| |
|
|||||||||| | ||||||||| | |||||||||| ||||||||| |||| ||||||| |||||||| |
|
|
| T |
36235431 |
gttaaccatcatggtaaaagagtacacaagttacacttgttcagg-aaattcaatttcttatcagaa |
36235496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University