View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_high_1 (Length: 801)
Name: NF14695_high_1
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 744; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 23 - 786
Target Start/End: Complemental strand, 7832809 - 7832046
Alignment:
| Q |
23 |
aatgaggtatgataagatttgaacggttgcatacttgcagtaggattcaaactaccgaggtttagatgacttgatgtttgcagactaaactcttagatct |
122 |
Q |
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| T |
7832809 |
aatgaggtatgataggatttgaacggttgcatacttgcagtaggattcaaactaccgaggtttagatgacttgatgtttgcagactaaactcttagatct |
7832710 |
T |
|
| Q |
123 |
ttggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaa |
222 |
Q |
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| T |
7832709 |
ttggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaa |
7832610 |
T |
|
| Q |
223 |
cagaaagcttactgtaaatttgttttacatagttttattgatctgtgtgttgcatacacatattaacaattttcaatttattcatttcctgcttttatct |
322 |
Q |
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| T |
7832609 |
cagaaagcttactgtaaatttgttttacatagttttattgatctgtgtgttgcatacacatattaacaattttcaatttattcatttcctgcttttatct |
7832510 |
T |
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| Q |
323 |
tcttgcagattatgactttaatggaaatttataatgtactaactagcaaaaaatatctcttttcaccatctttgcccctcaaatgctctatcaaatcatt |
422 |
Q |
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| T |
7832509 |
tcttgcaaattatgactttaatggaaatttataatgtactaactagcaaaaaatatctcttttcaccatctttgcccctcaaatgctctatcaaatcatt |
7832410 |
T |
|
| Q |
423 |
ccagggtttgagggtatattcaaaccctgaagcacccatgtgaggggtacgattcaatacaatttcaactactcctaaggatgagtcttacaacaatttc |
522 |
Q |
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| T |
7832409 |
gcagggtttgagggtatattcaaaccctgaagcacccatgtaaggggtacgattcaatacaatttcaactactcctaaggatgagtcttacaacaatttc |
7832310 |
T |
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| Q |
523 |
atttaaatcaattattattcaatcacaacagcagcagcagcatccaatccacataataagacttttcttgctcaaacccatcttattctgtttttgattt |
622 |
Q |
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| T |
7832309 |
atttaaatcaattattattcaatcacaacagcagcagcagcatccaatccacataataagacttttcttgctcaaactcatcttattctgtttttgattt |
7832210 |
T |
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| Q |
623 |
gtgctgtgaatttgacctcccaactcacgctgtttctgattctgagcattgtgctccattctaatattaccacacttagcatcaacctccaccctcagct |
722 |
Q |
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| T |
7832209 |
gtgctgtgaatttgacctcccaactcacgctgtttctgattctgagcattgtgctccattctaatattaccacacttagcatcaacctccaccctcagct |
7832110 |
T |
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| Q |
723 |
tcccataagttgtccttttgaaattacatcccaaccttcccaatctttcctgtcctttgatgat |
786 |
Q |
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| T |
7832109 |
tcccataagttgtccttttgaaattacatcccaaccttcccaatctttcctgtcctttgatgat |
7832046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 7914887 - 7914765
Alignment:
| Q |
124 |
tggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaac |
223 |
Q |
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|||||||||||||| |||||||| |||||| |||| | | |||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||| |
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| T |
7914887 |
tggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaac |
7914788 |
T |
|
| Q |
224 |
agaaagcttactgtaaatttgtt |
246 |
Q |
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||| || ||||||||||| |||| |
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| T |
7914787 |
agatagtttactgtaaatctgtt |
7914765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 7834416 - 7834489
Alignment:
| Q |
124 |
tggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaat |
197 |
Q |
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||||||| |||||| |||||||| |||||| |||| | | ||||||||||||||||||||||||| | |||||| |
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| T |
7834416 |
tggttttagtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgtatcgagtaat |
7834489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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