View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_high_15 (Length: 345)
Name: NF14695_high_15
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 93 - 327
Target Start/End: Complemental strand, 18936002 - 18935768
Alignment:
| Q |
93 |
gcaactgtcaaataagaaagggagaaagagagaacctggaaaatgttttctttgagcgtattaacgacatgacagttcattccaatttgaaccaaaagtg |
192 |
Q |
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| T |
18936002 |
gcaactgtcaaataagaaagggagaaagagagaacctggaaaatgttttctttgagcgtattaacgacatgacagttcattccaatttgaaccaaaagtg |
18935903 |
T |
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| Q |
193 |
atgtcaaggaattttgtgagcttgaaccgcgaacttgactgcaacaatgagtggatgctgaagtcacaaaatttgaggattgtgctgtgttttgcattgc |
292 |
Q |
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| T |
18935902 |
atgtcaaggaattttgtgagcttgaaccgcgaacttgactgcaacaatgagtggatgctgaagtcacaaaatttgaggattgtgctgtgttttgcattgc |
18935803 |
T |
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| Q |
293 |
ttccaattcctcacaacttttggcatgtaagttat |
327 |
Q |
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| T |
18935802 |
ttccaattcctcacaacttttggcatgtaagttat |
18935768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 93 - 327
Target Start/End: Original strand, 34724051 - 34724285
Alignment:
| Q |
93 |
gcaactgtcaaataagaaagggagaaagagagaacctggaaaatgttttctttgagcgtattaacgacatgacagttcattccaatttgaaccaaaagtg |
192 |
Q |
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| T |
34724051 |
gcaactgtcaagtaagaaagggagaaagaaagaacctggaaaatgttttctttaagagtattagtgacacggcagttcattccaatttgaataaaaagtg |
34724150 |
T |
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| Q |
193 |
atgtcaaggaattttgtgagcttgaaccgcgaacttgactgcaacaatgagtggatgctgaagtcacaaaatttgaggattgtgctgtgttttgcattgc |
292 |
Q |
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| T |
34724151 |
atgtcaaggaattttgtgagcttgaactgggaacttgactgcaacaatgagtggatgctgaagtcacaaactttgaggattgtgctgtgttttgcattgc |
34724250 |
T |
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| Q |
293 |
ttccaattcctcacaacttttggcatgtaagttat |
327 |
Q |
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| T |
34724251 |
ttccaattcctcacaacttttggtatgtaagttat |
34724285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 21228529 - 21228480
Alignment:
| Q |
169 |
tcattccaatttgaaccaaaagtgatgtcaaggaattttgtgagcttgaa |
218 |
Q |
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| T |
21228529 |
tcattcccatttgaatcaaaagggatgtcaaggaactttttgagcttgaa |
21228480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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