View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_high_22 (Length: 314)
Name: NF14695_high_22
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 12995459 - 12995746
Alignment:
| Q |
10 |
acatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactctaacaccaagggcaactttatatacacctttaatttttctctattca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12995459 |
acatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactataacaccaagggcaacttcatatacacctttaatttttctctattca |
12995558 |
T |
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| Q |
110 |
ttttcgttctagaaattttaactggtggagctaagattttatactttataaaaatagcacaaacgaaaagacttaactacnnnnnnnttaaatcagggag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12995559 |
ttttcgttctagaaattttaactggtggagctaagattttatactttataaaaatagcacaaacgaaaagacttaactacaaaaaaattaaatcagggag |
12995658 |
T |
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| Q |
210 |
aagaatttagagaaaaacaactaacatctctatctaaaccttcactaaacttagtgacagtggagttattgagaaacttcatattttt |
297 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12995659 |
aagagtttagagaaaaacaactaacatctctgtctaaaccttcactaaacttagtgacagtggagttattgagaaacttcatattttt |
12995746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 8988418 - 8988351
Alignment:
| Q |
12 |
atcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactctaacaccaagggcaact |
79 |
Q |
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|||||||| | ||||||||| |||| ||||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
8988418 |
atcatcaacacacttaatacatagtataatcaaacatcatcaaaacaactcttacaccaagggcaact |
8988351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 22916869 - 22916802
Alignment:
| Q |
10 |
acatcatcaaaatacttaatacctagttt-aatcaagcatcaccaaaacaactctaacaccaagggca |
76 |
Q |
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|||||||||| | |||||||||||||||| |||||| ||||| ||||||||||| | |||||||||| |
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| T |
22916869 |
acatcatcaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggca |
22916802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 22902039 - 22901971
Alignment:
| Q |
10 |
acatcatcaaa-atacttaatacctagttt-aatcaagcatcaccaaaacaactctaacaccaagggca |
76 |
Q |
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||||||||||| | |||||||||||||||| |||||| ||||| ||||||||||| | |||||||||| |
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| T |
22902039 |
acatcatcaaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggca |
22901971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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