View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14695_high_25 (Length: 280)
Name: NF14695_high_25
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_high_25 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 24 - 280
Target Start/End: Original strand, 51237845 - 51238101
Alignment:
| Q |
24 |
aatcccaacaaataaaaggcataagagacacaagcaagcatccggtatatcgtggtgtccgaatgcgaaattggggaaaatgggtgtccgaaattcgtga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51237845 |
aatcccaacaaataaaaggcataagagacacaagcaagcatccggtatatcgtggtgtccgaatgcgaaattggggaaaatgggtgtccgaaattcgtga |
51237944 |
T |
|
| Q |
124 |
gcctaagaaaaaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcacacgatgtagctgctctcagtataaaaggaggtgcc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51237945 |
gcctaagaaaaaatcccgaatatggctcggcacatttcccacaccggaaatggcagctcgagcacacgatgtagctgctctcagtataaaaggaagtgcc |
51238044 |
T |
|
| Q |
224 |
gccattctcaacttccctgagttagcaaacttgcttcctcgaccggcttcacgtgct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51238045 |
gccattctcaacttccctgagttagcaaacttgcttcctcgaccggcttcacttgct |
51238101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 505656 - 505544
Alignment:
| Q |
90 |
gaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcaca |
189 |
Q |
| |
|
|||||||||| |||| |||| || ||||||||||| ||||||||||| |||||||||| || |||| || ||| | |||||||| ||| ||||||| |
|
|
| T |
505656 |
gaaattgggggaaatttgtgtgtgagattcgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcaca |
505557 |
T |
|
| Q |
190 |
cgatgtagctgct |
202 |
Q |
| |
|
|||||||||||| |
|
|
| T |
505556 |
tgatgtagctgct |
505544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 4268648 - 4268757
Alignment:
| Q |
89 |
cgaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcac |
188 |
Q |
| |
|
||||| |||||||||||||| || ||||| || || || |||||||| |||| ||||| || ||||| | |||||||||||||| ||| |||||| |
|
|
| T |
4268648 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
4268747 |
T |
|
| Q |
189 |
acgatgtagc |
198 |
Q |
| |
|
|||||||||| |
|
|
| T |
4268748 |
acgatgtagc |
4268757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 3996512 - 3996397
Alignment:
| Q |
71 |
tatcgtggtgtccgaatgcgaaattggggaaaatgggtgtccgaaattcgtgagcctaagaaaaaatcccgaatatggctcggcacatttcccacaccag |
170 |
Q |
| |
|
|||||||| || ||||||| | ||||||||||||||| || |||||| | ||||| ||||||||||| |||| ||||| ||||| | ||| ||||| | |
|
|
| T |
3996512 |
tatcgtggagtaagaatgcgtagttggggaaaatgggtttcagaaattagagagcccaagaaaaaatcaagaatttggctaggcacttatccaacacccg |
3996413 |
T |
|
| Q |
171 |
aaatggctgctcgagc |
186 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
3996412 |
agatggcagctcgagc |
3996397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 16357926 - 16357819
Alignment:
| Q |
95 |
tggggaaaatgggtgtccgaaattcgtgagcctaagaaa-aaatcccgaatatggctcggcacatttcccacaccagaaatggctgctcgagcacacgat |
193 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||| || || |||||||||| || |||| || ||| | |||||||| ||| |||| || ||| |
|
|
| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagcc-aagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgat |
16357828 |
T |
|
| Q |
194 |
gtagctgct |
202 |
Q |
| |
|
||||||||| |
|
|
| T |
16357827 |
gtagctgct |
16357819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University