View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14695_high_28 (Length: 255)

Name: NF14695_high_28
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14695_high_28
NF14695_high_28
[»] chr1 (30 HSPs)
chr1 (1-237)||(15009711-15009947)
chr1 (1-237)||(15030809-15031045)
chr1 (28-237)||(15023828-15024037)
chr1 (57-237)||(15001108-15001288)
chr1 (28-237)||(15031169-15031378)
chr1 (8-237)||(15009927-15010156)
chr1 (28-237)||(15031025-15031234)
chr1 (28-237)||(14533649-14533858)
chr1 (28-196)||(15036060-15036228)
chr1 (29-195)||(15024014-15024180)
chr1 (29-195)||(15031355-15031521)
chr1 (28-237)||(15016114-15016323)
chr1 (27-237)||(15024116-15024326)
chr1 (27-237)||(15031457-15031667)
chr1 (114-221)||(14523470-14523577)
chr1 (135-237)||(15036163-15036265)
chr1 (28-237)||(14533793-14534002)
chr1 (135-237)||(15024260-15024362)
chr1 (135-237)||(15031601-15031703)
chr1 (145-237)||(14533622-14533714)
chr1 (138-237)||(15010143-15010242)
chr1 (145-237)||(14503125-14503217)
chr1 (157-237)||(15016258-15016338)
chr1 (1-38)||(15001235-15001272)
chr1 (1-38)||(15031152-15031189)
chr1 (1-33)||(15023960-15023992)
chr1 (1-33)||(15031301-15031333)
chr1 (157-191)||(14481606-14481640)
chr1 (1-38)||(15010054-15010091)
chr1 (28-101)||(15023820-15023893)
[»] scaffold0400 (3 HSPs)
scaffold0400 (28-185)||(11686-11843)
scaffold0400 (63-195)||(11532-11664)
scaffold0400 (28-125)||(11890-11987)
[»] scaffold0365 (3 HSPs)
scaffold0365 (28-185)||(12329-12486)
scaffold0365 (63-195)||(12175-12307)
scaffold0365 (28-125)||(12533-12630)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 15009947 - 15009711
Alignment:
Q  1 aaattgatcaagttacctatggaaggtggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtg 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||    
T  15009947 aaattaatcaaattacctatggaaggtggaattggtccagagagatgatttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtg 15009848  T
Q  101 gaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtcc 200  Q
    |||||||||| |||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||      
T  15009847 gaatttgtccagtgagagcatttgaataaaaatacaattcacttagcttcgttaaatttccgatagtgaaaggaattggtccagagagagtattttgtga 15009748  T
Q  201 aaggtcaacagtatccaaattaatcaaattacctatg 237  Q
    |||||||| |||||| |||||||||||||||||||||    
T  15009747 aaggtcaatagtatctaaattaatcaaattacctatg 15009711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 15031045 - 15030809
Alignment:
Q  1 aaattgatcaagttacctatggaaggtggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtg 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||    
T  15031045 aaattaatcaaattacctatggaaggtggaattggtccagagagatgatttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtg 15030946  T
Q  101 gaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtcc 200  Q
    |||||||||| |||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||      
T  15030945 gaatttgtccagtgagagcatttgaataaaaatacaattcacttagcttcgttaaatttccgatagtgaaaggaattggtccagagagagtattttgtga 15030846  T
Q  201 aaggtcaacagtatccaaattaatcaaattacctatg 237  Q
    |||||||| |||||| |||||||||||||||||||||    
T  15030845 aaggtcaatagtatctaaattaatcaaattacctatg 15030809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 15024037 - 15023828
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||| ||||||||||||||||| |||| ||||  |||| |||||||||||||||||| |||||||||||||| ||| | |||||||||||| |    
T  15024037 ggaattggtccagagagatgatttcttgataggtgaataagatccaaattgatcaagttacctatggaaggtggaatttctccggagagagcatttgaat 15023938  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaa 227  Q
     |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||    
T  15023937 aaaaatacaattcacttagtttggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaaggtcaatactatccaaattaatcaa 15023838  T
Q  228 attacctatg 237  Q
    ||||||||||    
T  15023837 attacctatg 15023828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 15001288 - 15001108
Alignment:
Q  57 aaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaa 156  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||    
T  15001288 aaggtaaatagtatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcatttgaataaaaatacaattcacttagtttcgttaaa 15001189  T
Q  157 tttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacctatg 237  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| |||||||||||||||||||||    
T  15001188 tttccgatagtgaaaggaattggtccagagagagtattttgtgaaaggtcaatagtatctaaattaatcaaattacctatg 15001108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 15031378 - 15031169
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||| ||||||||||||||||| |||| ||||  |||| |||||||||||||||||| |||||||||||||| ||| | |||||||||||| |    
T  15031378 ggaattggtccagagagatgatttcttgataggtgaataagatccaaattgatcaagttacctatggaaggtggaatttctccggagagagcatttgaat 15031279  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaa 227  Q
     |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||| |||||    
T  15031278 aaaaatacaattcacttagtttggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaaggtcaatantatccaaattgatcaa 15031179  T
Q  228 attacctatg 237  Q
     |||||||||    
T  15031178 gttacctatg 15031169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 15010156 - 15009927
Alignment:
Q  8 tcaagttacctatggaaggtggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttg 107  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||    
T  15010156 tcaaattacctatggaaggtggaattggtccagagagatgatttcttgaaagggaaatattatccaaattgatcaagttacctacggaaggtggaatttg 15010057  T
Q  108 tcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtca 207  Q
    ||| |||||||||||| | | || | |||||  ||| ||||| || |||||||| |||||| |||||||||||||||||||||||||||||  ||||  |    
T  15010056 tccagtgagagcatttaaataaagagataatgtactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg-ga 15009958  T
Q  208 acagt-atccaaattaatcaaattacctatg 237  Q
    | ||| |||||||||||||||||||||||||    
T  15009957 aaagtaatccaaattaatcaaattacctatg 15009927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 15031234 - 15031025
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||| ||||||| ||||  |||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| | |    
T  15031234 ggaattggtccagagagattattttgtgaaaggtcaatantatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcatttaaat 15031135  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagt-atccaaattaatca 226  Q
     || | |||||  ||| ||||| || |||||||| |||||| |||||||||||||||||||||||||||||  ||||  || ||| ||||||||||||||    
T  15031134 aaagagataatgtactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg-gaaaagtaatccaaattaatca 15031036  T
Q  227 aattacctatg 237  Q
    |||||||||||    
T  15031035 aattacctatg 15031025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 14533649 - 14533858
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||| ||||| | ||||  ||||||||||||||||||| |||| | || |||||||| ||||||||||| |||||| |||||||||||||| |    
T  14533649 ggaattggtccagagagtttattttctgaaaggtaaatagtatccaaattaaccatgttacctatggaaggtggaagttgtccagtgagagcatttgaat 14533748  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaa 227  Q
     || | |||||  ||||| ||||||||||||||| | |||| |||||||||||| |||||| ||||||| |  |||||||| |||||||||||||| ||     
T  14533749 gaagagataatatacttactttcgttaaatttccaacagtggaaggaattggtctagagagtttattttctgaaaggtcaatagtatccaaattaaccag 14533848  T
Q  228 attacctatg 237  Q
     |||||||||    
T  14533849 gttacctatg 14533858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 15036228 - 15036060
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||| ||||||| ||||  |||||||| ||||| |||| |||| ||||| ||||||| |||||||||||||| ||| |||||||||||||| |    
T  15036228 ggaattggtccagagagattatttagtgaaaggtgaatagaatccaaattaatcaaattacctatggaaggtggaatttttccagtgagagcatttgagt 15036129  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattatttt 196  Q
     ||   |||||||||| | ||| ||||||||||| |||||| ||||||||||||||||||| |||||||    
T  15036128 aaattaataattcactcactttggttaaatttccaatagtggaaggaattggtccagagagtttatttt 15036060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 15024180 - 15024014
Alignment:
Q  29 gaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattc 128  Q
    |||||||||| |||||||||||| |||||||||||||||||||| |||| ||||| || |||| |||||||||||||||||| |  |||||||||||       
T  15024180 gaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtggaatttgtccagcaagagcatttgagaa 15024081  T
Q  129 aaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattt 195  Q
    || | |||||  ||  ||||| |||||||||||||| ||| ||||||||||||||||||||| ||||    
T  15024080 aagagataatgtaccgagttttgttaaatttccgatggtggaaggaattggtccagagagatgattt 15024014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 15031521 - 15031355
Alignment:
Q  29 gaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattc 128  Q
    |||||||||| |||||||||||| |||||||||||||||||||| |||| ||||| || |||| |||||||||||||||||| |  |||||||||||       
T  15031521 gaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtggaatttgtccagcaagagcatttgagaa 15031422  T
Q  129 aaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattt 195  Q
    || | |||||  ||  ||||| |||||||||||||| ||| ||||||||||||||||||||| ||||    
T  15031421 aagagataatgtaccgagttttgttaaatttccgatggtggaaggaattggtccagagagatgattt 15031355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 15016323 - 15016114
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||| | ||||||| |||   ||||||||||| ||||| | |||| || || ||| ||| | |||||||||||||||| |||||| ||||||| |    
T  15016323 ggaattggttcagagagattattgtatgaaaggtaaagagtatgcaaattaattaaattatctatgaaaggtggaatttgtccggtgagatcatttgagt 15016224  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaa 227  Q
     || ||||| |  | | ||||| || |||||||| ||||||||||||| ||||||||||| |||||||| |  ||||| || ||||||||||||||||||    
T  15016223 aaagatatagtatattgagttttgtcaaatttcctatagtgaaaggaagtggtccagagatattattttctgaaaggttaatagtatccaaattaatcaa 15016124  T
Q  228 attacctatg 237  Q
    ||||||||||    
T  15016123 attacctatg 15016114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 15024326 - 15024116
Alignment:
Q  27 tggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgat 126  Q
    |||||||||||| ||||||| ||||  ||||||| ||||   |||| |||| ||||| ||||||| |||||||||||||||||| ||||||||||||       
T  15024326 tggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcatttacg 15024227  T
Q  127 tcaaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatca 226  Q
     ||| |  ||||| ||| | ||| ||||||||||||||  || || |||||||||||||||||| ||||| |  ||||| || |||||||||||| ||||    
T  15024226 ccaagagttaatttactcaattttgttaaatttccgatgatggaaagaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatca 15024127  T
Q  227 aattacctatg 237  Q
    |||| ||||||    
T  15024126 aatttcctatg 15024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 15031667 - 15031457
Alignment:
Q  27 tggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgat 126  Q
    |||||||||||| ||||||| ||||  ||||||| ||||   |||| |||| ||||| ||||||| |||||||||||||||||| ||||||||||||       
T  15031667 tggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcatttacg 15031568  T
Q  127 tcaaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatca 226  Q
     ||| |  ||||| ||| | ||| ||||||||||||||  || || |||||||||||||||||| ||||| |  ||||| || |||||||||||| ||||    
T  15031567 ccaagagttaatttactcaattttgttaaatttccgatgatggaaagaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatca 15031468  T
Q  227 aattacctatg 237  Q
    |||| ||||||    
T  15031467 aatttcctatg 15031457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 14523470 - 14523577
Alignment:
Q  114 gagagcatttgattcaaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagta 213  Q
    ||||||||||||   |||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||  || ||||| ||||    
T  14523470 gagagcatttgagagaaaagataattcacttactttcgttaaatttccgatagtggaaggaagtggtccagagagtttattttgtgaaaagtcaatagta 14523569  T
Q  214 tccaaatt 221  Q
    ||||||||    
T  14523570 tccaaatt 14523577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 15036265 - 15036163
Alignment:
Q  135 taattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacct 234  Q
    |||| |||| ||||| || |||||| |||||||| |||||||||||||||||||||||||| ||  ||||| || || ||||||||||||||||||||||    
T  15036265 taatgcactgagttttgtcaaattttcgatagtggaaggaattggtccagagagattatttagtgaaaggtgaatagaatccaaattaatcaaattacct 15036166  T
Q  235 atg 237  Q
    |||    
T  15036165 atg 15036163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 14533793 - 14534002
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||  ||||| | ||||  |||||||| |||||||||| |||| | || |||||||| |||||||||||||||||| ||||||||||||||      
T  14533793 ggaattggtctagagagtttattttctgaaaggtcaatagtatccaaattaaccaggttacctatggaaggtggaatttgtccggtgagagcatttgagg 14533892  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaa 227  Q
     || ||||||  |  | ||||| || ||||||||||||||  |||||| |||||||||||  ||||| |    |||||||| |||||| ||||| | |||    
T  14533893 aaagatataacactgtgagttttgtcaaatttccgatagtagaaggaagtggtccagagattttattgtccgaaaggtcaatagtatctaaattgaccaa 14533992  T
Q  228 attacctatg 237  Q
     |||||||||    
T  14533993 tttacctatg 14534002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 15024362 - 15024260
Alignment:
Q  135 taattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacct 234  Q
    |||||| || ||||| || ||||||||||||||| | |||||||||||||||||||||||||||  ||||  ||    ||||||||||||||||||||||    
T  15024362 taattcgctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacct 15024263  T
Q  235 atg 237  Q
    |||    
T  15024262 atg 15024260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 15031703 - 15031601
Alignment:
Q  135 taattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacct 234  Q
    |||||| || ||||| || ||||||||||||||| | |||||||||||||||||||||||||||  ||||  ||    ||||||||||||||||||||||    
T  15031703 taattcgctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacct 15031604  T
Q  235 atg 237  Q
    |||    
T  15031603 atg 15031601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 14533622 - 14533714
Alignment:
Q  145 agtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacctatg 237  Q
    ||||| || ||||||||||||||| ||||||||||||||||||| ||||||| |  ||||| || |||||||||||||| ||  |||||||||    
T  14533622 agttttgtcaaatttccgatagtggaaggaattggtccagagagtttattttctgaaaggtaaatagtatccaaattaaccatgttacctatg 14533714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 15010242 - 15010143
Alignment:
Q  138 ttcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagt-atccaaattaatcaaattacctat 236  Q
    |||||| ||||| || |||||||| |||||| |||||||||||||||||||||||||||||  ||||  || ||| |||||||||| |||||||||||||    
T  15010242 ttcactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg-gaaaagtaatccaaattagtcaaattacctat 15010144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 14503217 - 14503125
Alignment:
Q  145 agtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacctatg 237  Q
    |||||||| ||||||||||||||  ||||||||||||||||||| ||||||||   ||||  || || || |||||||| |||||||||||||    
T  14503217 agtttcgtcaaatttccgatagttgaaggaattggtccagagaggttattttgaaaaaggataatagaattcaaattaaccaaattacctatg 14503125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 15016338 - 15016258
Alignment:
Q  157 tttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacctatg 237  Q
    ||||| |||||||||||||||||| ||||||||||||| | |  ||||| || ||||| ||||||||| |||||| |||||    
T  15016338 tttccaatagtgaaaggaattggttcagagagattattgtatgaaaggtaaagagtatgcaaattaattaaattatctatg 15016258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15001272 - 15001235
Alignment:
Q  1 aaattgatcaagttacctatggaaggtggaattggtcc 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15001272 aaattgatcaagttacctatggaaggtggaatttgtcc 15001235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15031189 - 15031152
Alignment:
Q  1 aaattgatcaagttacctatggaaggtggaattggtcc 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15031189 aaattgatcaagttacctatggaaggtggaatttgtcc 15031152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15023992 - 15023960
Alignment:
Q  1 aaattgatcaagttacctatggaaggtggaatt 33  Q
    |||||||||||||||||||||||||||||||||    
T  15023992 aaattgatcaagttacctatggaaggtggaatt 15023960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15031333 - 15031301
Alignment:
Q  1 aaattgatcaagttacctatggaaggtggaatt 33  Q
    |||||||||||||||||||||||||||||||||    
T  15031333 aaattgatcaagttacctatggaaggtggaatt 15031301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 14481640 - 14481606
Alignment:
Q  157 tttccgatagtgaaaggaattggtccagagagatt 191  Q
    |||||||||||| ||||||||||||||||||||||    
T  14481640 tttccgatagtggaaggaattggtccagagagatt 14481606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15010091 - 15010054
Alignment:
Q  1 aaattgatcaagttacctatggaaggtggaattggtcc 38  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  15010091 aaattgatcaagttacctacggaaggtggaatttgtcc 15010054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 15023893 - 15023820
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtgg 101  Q
    ||||||||||| ||||||| ||||  |||||||| |||| ||||| |||| ||||| ||||||| ||| |||||    
T  15023893 ggaattggtccagagagattattttgtgaaaggtcaatactatccaaattaatcaaattacctatggatggtgg 15023820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 11843 - 11686
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||||||||| | |||| |   ||||  ||||| |||| |||||| ||||||||||| |||| ||||||||||||| ||||||||||||||      
T  11843 ggaattggtcccgagagtttatttatatgaaggataatagaatccaaattgaccaagttacctatggaatgtggaatttgtccggtgagagcatttgaga 11744  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccaga 185  Q
     || |  ||| ||| | ||||| || |||||||| |||||||||||||| ||||||||    
T  11743 aaagagttaactcagtgagttttgtcaaatttcctatagtgaaaggaataggtccaga 11686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 11664 - 11532
Alignment:
Q  63 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccg 162  Q
    |||||||||| |||||| |||||||  || |||||||||||||||||| ||||||||||||||   || | ||||     | ||||| || |||||||||    
T  11664 aatagtatccaaattgaccaagttatatatggaaggtggaatttgtccggtgagagcatttgagaaaagagataacattgtgagttttgtcaaatttccg 11565  T
Q  163 atagtgaaaggaattggtccagagagattattt 195  Q
    ||||||  |||||||||||| ||||| ||||||    
T  11564 atagtggtaggaattggtcccgagagtttattt 11532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 11987 - 11890
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttga 125  Q
    ||||||||||| ||| | | |||| |||||| |  ||||| |||| | |||| ||||||||| | |||||||||||||||||| ||||||||||||||    
T  11987 ggaattggtccagagggtttatttgttgaaatggtaatagaatccaagttgaccaagttaccaatggaaggtggaatttgtccggtgagagcatttga 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 12486 - 12329
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgatt 127  Q
    ||||||||||||||||| | |||| |   ||||  ||||| |||| |||||| ||||||||||| |||| ||||||||||||| ||||||||||||||      
T  12486 ggaattggtcccgagagtttatttatatgaaggataatagaatccaaattgaccaagttacctatggaatgtggaatttgtccggtgagagcatttgaga 12387  T
Q  128 caaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccaga 185  Q
     || |  ||| ||| | ||||| || |||||||| |||||||||||||| ||||||||    
T  12386 aaagagttaactcagtgagttttgtcaaatttcctatagtgaaaggaataggtccaga 12329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 12307 - 12175
Alignment:
Q  63 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccg 162  Q
    |||||||||| |||||| |||||||  || |||||||||||||||||| ||||||||||||||   || | ||||     | ||||| || |||||||||    
T  12307 aatagtatccaaattgaccaagttatatatggaaggtggaatttgtccggtgagagcatttgagaaaagagataacattgtgagttttgtcaaatttccg 12208  T
Q  163 atagtgaaaggaattggtccagagagattattt 195  Q
    ||||||  |||||||||||| ||||| ||||||    
T  12207 atagtggtaggaattggtcccgagagtttattt 12175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 12630 - 12533
Alignment:
Q  28 ggaattggtcccgagagatgatttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttga 125  Q
    ||||||||||| ||| | | |||| |||||| |  ||||| |||| | |||| ||||||||| | |||||||||||||||||| ||||||||||||||    
T  12630 ggaattggtccagagggtttatttgttgaaatggtaatagaatccaagttgaccaagttaccaatggaaggtggaatttgtccggtgagagcatttga 12533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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