View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_high_34 (Length: 236)
Name: NF14695_high_34
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_high_34 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23028256 - 23028491
Alignment:
| Q |
1 |
catcttcattcgctcttggctaattgctcacatggatcagaacctttttagatgtttaggtaaaatttattaaattggttgtatttagaagaaggtagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23028256 |
catcttcattcgctcttggctaattgctcacatggatcagaacctttttagatgtttaggtaaaatttattaaattggttgtatttagaagaaggtagta |
23028355 |
T |
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| Q |
101 |
aatctaagggtacattttttgccatttggtgatgccttgtaaatttgagtgatattctctgnnnnnnnnnnnnnnnnnctgggtacatcttgtattagga |
200 |
Q |
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| T |
23028356 |
aatctaagggtacattttttgccatttggtgatgccttgtaaatttgagtgatattctctgttttttggtgtttttttctgggtacatcttgtattagga |
23028455 |
T |
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| Q |
201 |
gggtcaaaagttgtcgtaatatatttcatttcagtc |
236 |
Q |
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||| ||||||||||||||||||||||||||| |||| |
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| T |
23028456 |
gggccaaaagttgtcgtaatatatttcattttagtc |
23028491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 21578622 - 21578501
Alignment:
| Q |
115 |
ttttttgccatttggtgatgccttgtaaatttgagtgatattctctgnnnnnnnnnnnnnnnnnctgggtacatcttgtattaggagggtcaaaagttgt |
214 |
Q |
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| T |
21578622 |
ttttttgccatttggtgatgccttgtaaatttgactgatattctctgttttttggtgtttcttcctgggtacatcttgtactaggagggccaaaagttgt |
21578523 |
T |
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| Q |
215 |
cgtaatatatttcatttcagtc |
236 |
Q |
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| T |
21578522 |
cgtaatatatttcattttagtc |
21578501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 30696300 - 30696348
Alignment:
| Q |
183 |
gtacatcttgtattaggagggtcaaaagttgtcgtaatatatttcattt |
231 |
Q |
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| T |
30696300 |
gtacttcttgtattagaagggtcaaaagttatcgtaatatatttcattt |
30696348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 25106644 - 25106596
Alignment:
| Q |
183 |
gtacatcttgtattaggagggtcaaaagttgtcgtaatatatttcattt |
231 |
Q |
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| T |
25106644 |
gtacttcttgtactaggagggccaaaagttgtcgtaatatatctcattt |
25106596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 45966868 - 45966820
Alignment:
| Q |
183 |
gtacatcttgtattaggagggtcaaaagttgtcgtaatatatttcattt |
231 |
Q |
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| T |
45966868 |
gtacttcttgtactaggagggccaaaagttgtcgcaatatatttcattt |
45966820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 22660016 - 22659968
Alignment:
| Q |
183 |
gtacatcttgtattaggagggtcaaaagttgtcgtaatatatttcattt |
231 |
Q |
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| T |
22660016 |
gtacttcttgtactaggagggccaaaaattatcgtaatatatttcattt |
22659968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 16205993 - 16205950
Alignment:
| Q |
188 |
tcttgtattaggagggtcaaaagttgtcgtaatatatttcattt |
231 |
Q |
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| T |
16205993 |
tcttgtactaggagggccaaaagttgtcgtaatatatatcattt |
16205950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 16206069 - 16206028
Alignment:
| Q |
115 |
ttttttgccatttggtgatgccttgtaaatttgagtgatatt |
156 |
Q |
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| T |
16206069 |
ttttttggcatttggtgatgccttgtaaatttgcttgatatt |
16206028 |
T |
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