View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_high_9 (Length: 389)
Name: NF14695_high_9
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_high_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 287 - 389
Target Start/End: Original strand, 31950228 - 31950330
Alignment:
| Q |
287 |
aagtgttcttattaatgcaaatagatacaatctgtgactattgaacatcataaggtgattgaaatccaatattctccacagcaccaactgtcttgacttg |
386 |
Q |
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| T |
31950228 |
aagtgttcttattaaagcaaatagatacaatctgtgactatttaacatcataaggtgactgaaatccaatattctccacagcaccaactgtcttgacttg |
31950327 |
T |
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| Q |
387 |
cct |
389 |
Q |
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||| |
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| T |
31950328 |
cct |
31950330 |
T |
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Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 31949920 - 31950214
Alignment:
| Q |
16 |
ggaaatatgctatgaagcacttacacgtacatgacacttacacattaacactagtaaatagcaataattttctcaagccgcattggtgcaagacaatgag |
115 |
Q |
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| T |
31949920 |
ggaaatatgctatgaagcactgacacgtacgtgacacttacacatagacattagtaaatagcaataattttctcaagtcatgtagttgtcggacaatgag |
31950019 |
T |
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| Q |
116 |
acatatcgaacatgccttaaatttgaagtgtttg-ttctacataggaaatatgattacccaataac------aaattaaccggataattttctcaagccc |
208 |
Q |
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| T |
31950020 |
acttgtcgaacatgccttaaatttgaagtgtttgtttttacataggaaatatgatagccccataaccgggttattttctcaagtccatttatacaagtct |
31950119 |
T |
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| Q |
209 |
atataattttcaatgtttaaaaa-cactcatttctaaacgttactacagcattttgatagtttctaccacactccttttaagtgttcttattaat |
302 |
Q |
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| T |
31950120 |
atatagttttcaatgttcaaaaagcactcatttctaaatgtttctacatcactttaatattttctaccacactccttttaagtgttcttattaat |
31950214 |
T |
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