View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_10 (Length: 407)
Name: NF14695_low_10
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 2 - 389
Target Start/End: Original strand, 51852619 - 51853009
Alignment:
| Q |
2 |
agacacaaggtgttgaggccacaacttagtaagattatcatcactagccttgagttctcagaagcactgccctttgctgcattcacttcgttgctagtgg |
101 |
Q |
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| T |
51852619 |
agacacaaggtgttgaggccacaacttagtaagattatcatcactagccttgagttctcagaagcactaccctttgctgcattcacttcgttgctagtgg |
51852718 |
T |
|
| Q |
102 |
agatggtggcaaaactagatcatgttatggatgaagttgaagagttggggagaatgtcacattttaaagagtttagagatgatgatgataataatgcgaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51852719 |
agatggtggcaaaactagatcatgttatggatgaagttgaagagttggggagaatgtcacattttaaagagtttagagatgatgatgataataatgcgaa |
51852818 |
T |
|
| Q |
202 |
tattgttgtcacttgtgacagaccaaaaatgaatatagttgataataatgacttgccttcttatggagcggaataa---ttcctatcatcccacgagtga |
298 |
Q |
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| T |
51852819 |
tattgttgtcacttgtgacagaccaaaaatgaatatagttgataataatgacttgccttcttatggagcggaataattgttcctatcatcccacgagtga |
51852918 |
T |
|
| Q |
299 |
agttatacatgaatacattaatttagttgaacgttttttgcattacctattttatgcattctgcatagggaagattatgtactgtacacgg |
389 |
Q |
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| T |
51852919 |
agttatacatgaatacattaatttagttgaacgttttttgcattacctattttatgcattctgcatagggaagattatgtactgtacacgg |
51853009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 51822716 - 51822981
Alignment:
| Q |
8 |
aaggtgttgaggccacaacttagtaagattatcatcactagccttgagttctcagaagcactgccctttgctgcattcacttcgttgctagtggagatgg |
107 |
Q |
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| T |
51822716 |
aaggttttgaggccacaacttagtaaaattatcatcactagccttgagttctcagaagcactgccctttgctgctttcacttctatgctagtggagatgg |
51822815 |
T |
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| Q |
108 |
tggcaaaactagatcatgttatggatgaagttgaagagttggggagaatgtcacattttaaagagtttagagatgatgatgataataatgcgaatattgt |
207 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |||| |||||| ||||||| ||||| || ||| ||||||||| |
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| T |
51822816 |
tggcaaaactagatcatgttatggataaagttgaagaattgggaagaatgtcacactttagagagttcagagatggtgatg---atgatgagaatattgt |
51822912 |
T |
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| Q |
208 |
tgtcacttgtgacagaccaaaaatgaatatagttgataataatgacttgccttcttatggagcggaataatt |
279 |
Q |
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| T |
51822913 |
tgtcacttgtgagagaccgaaaatgaatatagttg---ataatgacttgccttcttatggagcagaataatt |
51822981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 51862864 - 51863010
Alignment:
| Q |
41 |
atcactagccttgagttctcagaagcactgccctttgctgcattcacttcgttgctagtggagatggtggcaaaactagatcatgttatggatgaagttg |
140 |
Q |
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||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
51862864 |
atcactagccttgagttctcagaagcactaccttttgctgctttcacttctttgcttgtggaaatggtggcaaaactagatcatgttatggataaagttg |
51862963 |
T |
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| Q |
141 |
aagagttggggagaatgtcacattttaaagagtttagagatgatgat |
187 |
Q |
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| T |
51862964 |
aagaattgggaaaaatgtctcactttagagagtttagagatgatgat |
51863010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 50571411 - 50571456
Alignment:
| Q |
200 |
aatattgttgtcacttgtgacagaccaaaaatgaatatagttgata |
245 |
Q |
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| T |
50571411 |
aatattgttgtcacttgtgagcgaccaaaaatgaatatagttgata |
50571456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 40635947 - 40636023
Alignment:
| Q |
41 |
atcactagccttgagttctcagaagcactgccctttgctgcattcacttcgttgctagtggagatggtggcaaaact |
117 |
Q |
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|||||||| |||||||| || |||||| |||| |||||||| || |||| ||||| ||||| | |||||||||||| |
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| T |
40635947 |
atcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctttgctcgtggaaacggtggcaaaact |
40636023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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