View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14695_low_12 (Length: 383)

Name: NF14695_low_12
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14695_low_12
NF14695_low_12
[»] chr4 (32 HSPs)
chr4 (6-233)||(2500086-2500313)
chr4 (71-233)||(46092776-46092939)
chr4 (71-233)||(53830012-53830175)
chr4 (69-233)||(20036713-20036878)
chr4 (71-233)||(2504501-2504665)
chr4 (69-233)||(21632277-21632445)
chr4 (73-233)||(5431177-5431339)
chr4 (69-233)||(21803363-21803531)
chr4 (69-183)||(34737312-34737425)
chr4 (307-367)||(2500389-2500449)
chr4 (298-366)||(5431046-5431114)
chr4 (6-66)||(21632159-21632219)
chr4 (6-66)||(21803589-21803649)
chr4 (6-66)||(2504382-2504442)
chr4 (6-66)||(53829892-53829952)
chr4 (298-367)||(34737532-34737601)
chr4 (6-66)||(5431401-5431461)
chr4 (6-66)||(46092998-46093058)
chr4 (298-367)||(53830239-53830308)
chr4 (299-367)||(21632512-21632580)
chr4 (299-367)||(21803228-21803296)
chr4 (298-367)||(2504730-2504798)
chr4 (188-233)||(10664868-10664913)
chr4 (188-233)||(10879013-10879058)
chr4 (298-367)||(20036577-20036646)
chr4 (8-61)||(20036941-20036993)
chr4 (298-367)||(46092644-46092712)
chr4 (6-52)||(34737199-34737245)
chr4 (189-233)||(1393357-1393401)
chr4 (199-233)||(10714276-10714310)
chr4 (199-233)||(10928046-10928080)
chr4 (189-233)||(20265095-20265139)
[»] chr3 (13 HSPs)
chr3 (71-233)||(35870814-35870977)
chr3 (71-233)||(52350204-52350367)
chr3 (71-233)||(48266732-48266889)
chr3 (73-231)||(26215781-26215941)
chr3 (298-366)||(26215648-26215716)
chr3 (6-66)||(35871035-35871095)
chr3 (6-66)||(52350426-52350486)
chr3 (298-367)||(35870680-35870749)
chr3 (298-367)||(48266599-48266668)
chr3 (298-367)||(52350071-52350139)
chr3 (16-66)||(26216003-26216053)
chr3 (169-233)||(16346053-16346119)
chr3 (189-233)||(2310018-2310062)
[»] chr7 (9 HSPs)
chr7 (71-233)||(25419076-25419239)
chr7 (71-233)||(47233329-47233492)
chr7 (73-233)||(44394132-44394294)
chr7 (6-66)||(25418957-25419017)
chr7 (298-351)||(44394016-44394069)
chr7 (6-66)||(44394356-44394416)
chr7 (298-367)||(25419304-25419372)
chr7 (298-355)||(47233556-47233613)
chr7 (19-66)||(47233222-47233269)
[»] chr6 (15 HSPs)
chr6 (71-233)||(13432954-13433117)
chr6 (84-233)||(16711635-16711784)
chr6 (6-66)||(13432835-13432895)
chr6 (169-233)||(20418341-20418406)
chr6 (69-124)||(18883130-18883185)
chr6 (298-367)||(13433182-13433250)
chr6 (7-66)||(16711504-16711563)
chr6 (17-66)||(18883244-18883293)
chr6 (302-366)||(16711851-16711915)
chr6 (189-233)||(20415790-20415834)
chr6 (189-233)||(20420355-20420399)
chr6 (189-233)||(30519029-30519073)
chr6 (179-233)||(26720755-26720809)
chr6 (197-233)||(18883091-18883127)
chr6 (189-233)||(20417310-20417354)
[»] chr5 (9 HSPs)
chr5 (71-233)||(36991519-36991682)
chr5 (91-231)||(21604657-21604798)
chr5 (69-183)||(37301419-37301532)
chr5 (6-66)||(36991741-36991801)
chr5 (298-367)||(37301639-37301708)
chr5 (6-66)||(21604518-21604578)
chr5 (298-367)||(36991386-36991454)
chr5 (6-64)||(37301301-37301359)
chr5 (310-367)||(21604817-21604874)
[»] chr2 (19 HSPs)
chr2 (71-233)||(7573592-7573755)
chr2 (71-233)||(16668187-16668350)
chr2 (91-233)||(29455798-29455941)
chr2 (71-233)||(41646209-41646376)
chr2 (71-233)||(43564598-43564750)
chr2 (6-66)||(41646089-41646149)
chr2 (6-64)||(29456022-29456080)
chr2 (6-66)||(7573473-7573533)
chr2 (6-66)||(16668068-16668128)
chr2 (16-64)||(43564812-43564860)
chr2 (298-367)||(7573820-7573888)
chr2 (298-367)||(16668415-16668483)
chr2 (6-66)||(5968263-5968323)
chr2 (298-367)||(41646441-41646510)
chr2 (142-233)||(15408642-15408732)
chr2 (298-366)||(43564465-43564533)
chr2 (187-233)||(33809756-33809802)
chr2 (188-233)||(35957730-35957775)
chr2 (189-233)||(6050968-6051012)
[»] chr1 (12 HSPs)
chr1 (71-233)||(13786707-13786870)
chr1 (71-233)||(25807272-25807435)
chr1 (69-233)||(39623921-39624075)
chr1 (6-66)||(13786929-13786989)
chr1 (6-66)||(25807153-25807213)
chr1 (179-233)||(22912174-22912228)
chr1 (298-367)||(13786574-13786642)
chr1 (17-66)||(22912048-22912097)
chr1 (298-367)||(25807500-25807568)
chr1 (17-66)||(39624133-39624182)
chr1 (174-227)||(23725628-23725682)
chr1 (298-350)||(22912292-22912344)
[»] chr8 (19 HSPs)
chr8 (73-233)||(20172421-20172583)
chr8 (71-233)||(918496-918659)
chr8 (84-233)||(11427669-11427820)
chr8 (69-233)||(10186820-10186987)
chr8 (74-184)||(4138801-4138911)
chr8 (6-66)||(4138974-4139034)
chr8 (17-66)||(10187045-10187094)
chr8 (301-366)||(11427887-11427951)
chr8 (298-351)||(20172305-20172358)
chr8 (6-66)||(918376-918436)
chr8 (6-66)||(20172645-20172705)
chr8 (299-367)||(4138650-4138718)
chr8 (299-367)||(10186687-10186755)
chr8 (7-60)||(11427553-11427606)
chr8 (188-233)||(35689986-35690031)
chr8 (199-230)||(26048027-26048058)
chr8 (298-332)||(918725-918759)
chr8 (200-233)||(21361480-21361513)
chr8 (189-233)||(19388087-19388131)
[»] scaffold0516 (3 HSPs)
scaffold0516 (69-227)||(3732-3891)
scaffold0516 (6-64)||(3951-4009)
scaffold0516 (69-123)||(4064-4118)
[»] scaffold0084 (2 HSPs)
scaffold0084 (6-66)||(11584-11644)
scaffold0084 (69-134)||(11461-11526)
[»] scaffold0507 (1 HSPs)
scaffold0507 (169-233)||(10489-10554)
[»] scaffold0015 (1 HSPs)
scaffold0015 (195-233)||(22583-22621)
[»] scaffold0010 (1 HSPs)
scaffold0010 (189-233)||(136055-136099)
[»] scaffold1577 (1 HSPs)
scaffold1577 (152-233)||(1461-1543)
[»] scaffold0585 (1 HSPs)
scaffold0585 (196-232)||(1549-1585)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 2500086 - 2500313
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttctatatccaaatcctctttcatcttttggcaattagttgag 105  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2500086 caaagacatggatacttgatcaaattaaactaacacctatggataaagattcttactttctacatccaaatcctctttcatcttttggcaattagttgag 2500185  T
Q  106 aaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaaaatattcatttttatgcatttttaatatgtttcct 205  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2500186 aaggaaaaatctctaataataataggaacaaccacatgttgtcttggaataaaaatgaatgaaaaaatattcatttttatgcatttttaatatgtttcct 2500285  T
Q  206 tccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||||||| ||||||||    
T  2500286 tccacatgcttagtgaacttttgatctc 2500313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 46092939 - 46092776
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| | ||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  46092939 ccaaatcctcctccatcttattgcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 46092840  T
Q  171 aatattcat-ttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46092839 aatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctc 46092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 53830012 - 53830175
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||| ||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  53830012 ccaaatcctcctccatcttatggaaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 53830111  T
Q  171 aatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53830112 aatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctc 53830175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 20036878 - 20036713
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaat-ga 167  Q
    |||||||||| | | | |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||  |||||||||||||  |    
T  20036878 atccaaatccacctccttcttatggcaattagttgagaaggaaaaatctctaatagttataggaacaaccacatgctggcttttaataaaaatgaataaa 20036779  T
Q  168 aaaaatattcatttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20036778 aaaaatattattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctc 20036713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 2504501 - 2504665
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaat-gaaa 169  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| ||||||||||||||  |||    
T  2504501 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 2504600  T
Q  170 aaatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  2504601 aaatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 2504665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 21632277 - 21632445
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaa 168  Q
    |||| ||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || |||  ||||||||||||| ||    
T  21632277 atcctaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttgaaataaaaatgaataaa 21632376  T
Q  169 aaaatattca----tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||    |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  21632377 aaaatattcaattttttttatggatttttaatatgtttccttccacatgtttagtgaactctttatctc 21632445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 5431339 - 5431177
Alignment:
Q  73 aaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatga-aaaa 171  Q
    |||||||| | |||||| ||||||||||||||||||||||||| ||||||| | |||| |||||||||||| || |||  ||||||||||||| | ||||    
T  5431339 aaatcctcctccatcttatggcaattagttgagaaggaaaaatatctaatagttatagtaacaaccacatgttggcttgaaataaaaatgaataacaaaa 5431240  T
Q  172 atattcatt-tttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  5431239 atattcattgtttatgcttttttaatatgtttcgttccacatgtttagtgaactcttgatctc 5431177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 21803531 - 21803363
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaa 168  Q
    |||| ||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| ||||||  |||| |  |||  ||||||||||||| ||    
T  21803531 atcctaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaacg-catgttagcttgaaataaaaatgaataaa 21803433  T
Q  169 aaaatattcattttt-----atgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||||||||     ||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  21803432 aaaatattcattttttttttatggatttttaatatgtttccttccacatgtttagtgaactctttatctc 21803363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 34737312 - 34737425
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaa 168  Q
    |||||||||||| |||||||| || |||||||||||||| ||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||    
T  34737312 atccaaatcctccttcatcttatgacaattagttgagaatgaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaat-aa 34737410  T
Q  169 aaaatattcattttt 183  Q
    |||||||||||||||    
T  34737411 aaaatattcattttt 34737425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 2500389 - 2500449
Alignment:
Q  307 atgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2500389 atgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 2500449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 5431114 - 5431046
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaat 366  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  5431114 caccatttcatatatgaagtgtcctttcaacaaaactctccctttttccaaatcctgtgtatgtgaaat 5431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 21632159 - 21632219
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21632159 caaagacacggatacttgatcaaattaaactaacacctatggataaagattcttactttct 21632219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 21803649 - 21803589
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21803649 caaagacacggatacttgatcaaattaaactaacacctatggataaagattcttactttct 21803589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 2504382 - 2504442
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  2504382 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 2504442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 53829892 - 53829952
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53829892 caaagacacagatacttgatcaaattaaactaacacctatggataaagattcttactttct 53829952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 34737532 - 34737601
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||| ||| |||||||    
T  34737532 caccatttcatatatgaagtgtcctttcaacaaaactctcccttttctcaaaacctgtgtatttgaaatc 34737601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 5431461 - 5431401
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  5431461 caaagacacggatacttgatcaaattaaaccaacacctatggataaagattcttagtttct 5431401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 46093058 - 46092998
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  46093058 caaagacacggatacttgatcaaattaaactaacatctatggataaatattcttactttct 46092998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 53830239 - 53830308
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||| ||| ||| |||||||    
T  53830239 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttcccaaaacttgtgtatttgaaatc 53830308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 21632512 - 21632580
Alignment:
Q  299 accatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    |||||||||| ||||||||||||||||||||||| ||||  |||| ||||||||||| ||| |||||||    
T  21632512 accatttcatatatgaagtgtcctttcaacaaaactctcatttttcccaaaacctgtgtatttgaaatc 21632580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 21803296 - 21803228
Alignment:
Q  299 accatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||| ||||||| ||| ||| |||||||    
T  21803296 accatttcatatatgaagtgtcctttcaacaaaactctcctttttcccaaaacatgtgtatttgaaatc 21803228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 2504730 - 2504798
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||  ||||||||| ||| |||||||    
T  2504730 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-taaaacctgtgtatttgaaatc 2504798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 10664868 - 10664913
Alignment:
Q  188 atttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||    
T  10664868 atttttaataggtttccttccacatgcttagtgaactcttaatctc 10664913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 10879013 - 10879058
Alignment:
Q  188 atttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||    
T  10879013 atttttaataggtttccttccacatgcttagtgaactcttaatctc 10879058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 20036646 - 20036577
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||| |||||| |||  ||||| |||||    
T  20036646 caccatttcatatatgaagtgtcctttcaacaaaactcttccttttcccaaaatctgcctatgtaaaatc 20036577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 20036993 - 20036941
Alignment:
Q  8 aagacatggatactttatcaaattaaactaacacctatggataaagattcttac 61  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  20036993 aagacatggatacttgatcaa-ttaaactaacacctatagataaagattcttac 20036941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 46092712 - 46092644
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||| ||||||||||| |||| | ||||||||||||||| ||| |||||||    
T  46092712 caccatttcatatatgaagtgtcttttcaacaaaactctctc-ttttccaaaacctgtgtatttgaaatc 46092644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 34737199 - 34737245
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaa 52  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||    
T  34737199 caaagacacggatacttgatcaaattaaactaacacttatggataaa 34737245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 1393401 - 1393357
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  1393401 ttttttatatgtttccttccacatgcttaatgagctcttgatctc 1393357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 10714310 - 10714276
Alignment:
Q  199 gtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||||||||||||||||| |||||    
T  10714310 gtttccttccacatgcttagtgaactcttaatctc 10714276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 10928080 - 10928046
Alignment:
Q  199 gtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||||||||||||||||| |||||    
T  10928080 gtttccttccacatgcttagtgaactcttaatctc 10928046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 20265095 - 20265139
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| |||||||||||||||||||||||  || |||||||||||    
T  20265095 ttttttatatgtttccttccacatgcttaacgagctcttgatctc 20265139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 35870977 - 35870814
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  35870977 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 35870878  T
Q  171 aatattcat-ttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35870877 aatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctc 35870814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 52350367 - 52350204
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  52350367 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 52350268  T
Q  171 aatattcat-ttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  52350267 aatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 52350204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 48266889 - 48266732
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||| ||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| ||||||||||||||         
T  48266889 ccaaatgctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaat----- 48266795  T
Q  171 aatattcatttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||| ||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48266794 aattttattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctc 48266732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 26215941 - 26215781
Alignment:
Q  73 aaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatga-aaaa 171  Q
    |||||||| | |||||| ||||||||||||||||||||||||| ||||||| | |||| |||||||||||| || ||| |||||||||||||| | ||||    
T  26215941 aaatcctcctccatcttatggcaattagttgagaaggaaaaatatctaatagttatagtaacaaccacatgttggcttggaataaaaatgaataacaaaa 26215842  T
Q  172 atattcatt-tttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatc 231  Q
    ||||| ||| ||||  | ||||||||||||||||||||||||| |||||||||||||||||    
T  26215841 atattaattgtttaaacttttttaatatgtttccttccacatgtttagtgaactcttgatc 26215781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 26215716 - 26215648
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaat 366  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||    
T  26215716 caccatttcatatatgaagtgtcctttcaacaaaattctccctttttccaaaacctgtgtttgtgaaat 26215648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 35871095 - 35871035
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35871095 caaagacacgaatacttgatcaaattaaactaacacctatggataaagattcttactttct 35871035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 52350486 - 52350426
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  52350486 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 52350426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 35870749 - 35870680
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||| ||| |||||||    
T  35870749 caccatttcatgtatgaagtgtcctttcaacaaaactctctcttttcccaaaacttgtgtatttgaaatc 35870680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 48266668 - 48266599
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    |||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||||||    
T  48266668 caccattttatatatgaagtgtcctttcaacaaaactctctctttttccaaaacctgtgtatttgaaatc 48266599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 52350139 - 52350071
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||| |||||||    
T  52350139 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-caaaacctgtgtatttgaaatc 52350071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 26216053 - 26216003
Alignment:
Q  16 gatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  26216053 gatacttgatcaaattaaaccaacacctatggataaagattcttagtttct 26216003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 16346053 - 16346119
Alignment:
Q  169 aaaatattcattttt-atgcattttta-atatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||| ||||||||||  ||| ||||||||||||||||||| |||||| ||||||||    
T  16346053 aaaatattcatttttcatgcatttttttataggtttccttccacatgcttaatgaacttttgatctc 16346119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 2310018 - 2310062
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  2310018 ttttttatatgtttccttccacatgcttaatgagctcttgatctc 2310062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 25419076 - 25419239
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  25419076 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 25419175  T
Q  171 aatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  25419176 aatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 25419239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 47233329 - 47233492
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| || |||||||||| ||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  47233329 ccaaatcctcctccatcttatgacaattagttgtgaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 47233428  T
Q  171 aatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47233429 aatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctc 47233492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 44394294 - 44394132
Alignment:
Q  73 aaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatga-aaaa 171  Q
    |||||||| | |||||| ||||||||||||||||||||||||| ||||||| | |||| |||||||||||| || ||| |||||||||||||| | ||||    
T  44394294 aaatcctcctccatcttatggcaattagttgagaaggaaaaatatctaatagttatagtaacaaccacatgttggcttggaataaaaatgaataacaaaa 44394195  T
Q  172 atattcatt-tttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  44394194 atattaattgtttatgcttttttaatatgtttccttccacatgtttagtgaactcttgatctc 44394132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 25418957 - 25419017
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  25418957 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 25419017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 44394069 - 44394016
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaac 351  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  44394069 caccatttcatatatgaagtgtcctttcaacaaaactctccctttttccaaaac 44394016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 44394416 - 44394356
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  44394416 caaagacacggatacttgatcaaattaaaccaacacctatggataaagattcttagtttct 44394356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 25419304 - 25419372
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||| |||||||    
T  25419304 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-caaaacctgtgtatttgaaatc 25419372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 47233556 - 47233613
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgt 355  Q
    ||||||||||| ||||||||||||||||||||||| |||  |||||||||||||||||    
T  47233556 caccatttcatatatgaagtgtcctttcaacaaaactctatctttttccaaaacctgt 47233613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 47233222 - 47233269
Alignment:
Q  19 actttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  47233222 acttgatcaaattaaactaacagctatggataaagattcttactttct 47233269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 13432954 - 13433117
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  13432954 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 13433053  T
Q  171 aatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  13433054 aatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 13433117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 16711635 - 16711784
Alignment:
Q  84 catcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaaaatattcatt-tt 182  Q
    |||||| || |||||||||||||||||||||| ||||||| | |||| |||||||||||| || ||| |||||||||||||| |||||||||||||| ||    
T  16711635 catcttatgacaattagttgagaaggaaaaatatctaatagttatagtaacaaccacatgttg-cttggaataaaaatgaataaaaaaatattcattgtt 16711733  T
Q  183 tatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  16711734 tatgcttttttaatatgtttccttccacatgtttagtgaactcttgatctc 16711784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 13432835 - 13432895
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13432835 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 13432895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 20418341 - 20418406
Alignment:
Q  169 aaaatattcattttt-atgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  20418341 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttgatctc 20418406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 18883185 - 18883130
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataa 124  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  18883185 atccaaatcctcgtccatcttatggcaattagttgagaaggaaaaatctctaataa 18883130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 13433182 - 13433250
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||| |||||||    
T  13433182 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-caaaacctgtgtatttgaaatc 13433250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 16711504 - 16711563
Alignment:
Q  7 aaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    ||||||| ||| |||| |||||||||||| |||||||||||||||||||||||| |||||    
T  16711504 aaagacacggacacttgatcaaattaaaccaacacctatggataaagattcttagtttct 16711563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 18883293 - 18883244
Alignment:
Q  17 atactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  18883293 atacttgatcaaattaaactaacatctatggatgaagattcttactttct 18883244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 16711851 - 16711915
Alignment:
Q  302 atttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaat 366  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||  || ||||||||||    
T  16711851 atttcatatatgaagtgtcatttcaacaaaactctcccttttttcaaaactcgtgtatgtgaaat 16711915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 20415790 - 20415834
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  20415790 ttttttatatgtttccttccacatgcttaatgatctcttgatctc 20415834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 20420355 - 20420399
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  20420355 ttttttatatgtttccttccacatgcttaatgagctcttgatctc 20420399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 30519029 - 30519073
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  30519029 ttttttatatgtttccttccacatgcttaatgagctcttgatctc 30519073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 26720755 - 26720809
Alignment:
Q  179 tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||| |||||||||||||||||| ||||||||||  ||| || ||||||||||||    
T  26720755 ttttaatgcatttttaatatgttcccttccacatctttaatggactcttgatctc 26720809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 18883127 - 18883091
Alignment:
Q  197 atgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||| | |||||||||||||||||||    
T  18883127 atgtttccttccacaggtttagtgaactcttgatctc 18883091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 20417354 - 20417310
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| | | |||||||||||    
T  20417354 ttttttatatgtttccttccacatgcttaataagctcttgatctc 20417310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 36991682 - 36991519
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | | |||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  36991682 ccaaatcctcctccttcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 36991583  T
Q  171 aatattcat-ttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36991582 aatattcattttttatgcatttttaatatgtttccttccacatgtttagtgaactcttgatctc 36991519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 21604657 - 21604798
Alignment:
Q  91 tggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaaaatattca-tttttatgcat 189  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| |||| ||||||| |||||||||||    
T  21604657 tggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaatatattcattttttatgcat 21604756  T
Q  190 ttttaatatgtttccttccacatgcttagtgaactcttgatc 231  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  21604757 ttttaatatgttttcttccacatgtttagtgaactcttgatc 21604798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 37301419 - 37301532
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaa 168  Q
    |||||||||||| | |||||| || ||||||| | |||| ||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||    
T  37301419 atccaaatcctcctccatcttatgacaattagctaagaatgaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaat-aa 37301517  T
Q  169 aaaatattcattttt 183  Q
    |||||||||||||||    
T  37301518 aaaatattcattttt 37301532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 36991801 - 36991741
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  36991801 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 36991741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 37301639 - 37301708
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||| ||| |||||||    
T  37301639 caccatttcatatatgaagtgtcctttcaacaaaactctcccttttctcaaaacctgtgtatttgaaatc 37301708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 21604518 - 21604578
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  21604518 caaagacacgaatacttgatcaaattaaaccaacacctatggataaagattcttactttct 21604578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 36991454 - 36991386
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||| ||| |||||||    
T  36991454 caccatttcatatatgaagtgtcctttcaacaaaactctctc-ttttccaaaacctgtgtatttgaaatc 36991386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 37301301 - 37301359
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttacttt 64  Q
    ||||||||  ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  37301301 caaagacacagatacttgatcaaattaaactaacacttatggataaaaattcttacttt 37301359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 21604817 - 21604874
Alignment:
Q  310 tatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||| ||| |||||||    
T  21604817 tatgaagtgtcctttcaacaaaactctctcttttaccaaaacctgtgtatttgaaatc 21604874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 7573592 - 7573755
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  7573592 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 7573691  T
Q  171 aatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  7573692 aatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 7573755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 16668187 - 16668350
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| |||||||||| |||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  16668187 ccaaatcctcctccatcttatggcaattagctgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 16668286  T
Q  171 aatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  16668287 aatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 16668350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 29455941 - 29455798
Alignment:
Q  91 tggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaaaatattcat-ttttatgcat 189  Q
    |||||||||||||||||||||||| |||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||||||||||| ||||||||||    
T  29455941 tggcaattagttgagaaggaaaaaactctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaaaatattcattttttatgcat 29455842  T
Q  190 ttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  29455841 ttttaatatgtttccttccacatatttagtgaactcttgatctc 29455798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 41646209 - 41646376
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||  ||||| |||||||| |||||||||||||| | |||| |||||||||||| |  ||| |||||||||||||| ||||    
T  41646209 ccaaatcctcgtccatcttatgaaaattaattgagaagaaaaaatctctaatagttatagcaacaaccacatgttagcttggaataaaaatgaataaaaa 41646308  T
Q  171 aatattca-----tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||     |||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  41646309 aatattcattttttttttatgcatttttaatatctttccttccacatgtttcgtgaactcttgatctc 41646376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 43564750 - 43564598
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    ||||||| || | |||||| ||||||||||||| ||||||||||| ||||||| | |||  |||||||||||| || ||| |||||||||||||| ||||    
T  43564750 ccaaatcatcctccatcttatggcaattagttgggaaggaaaaatatctaatagttataacaacaaccacatgttggcttggaataaaaatgaataaaaa 43564651  T
Q  171 aatattcatttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||          ||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  43564650 aa----------tatgcatttttaatatgtttctttccacatatttagtgaactcttgatctc 43564598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 41646089 - 41646149
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41646089 caaagacacggatacttgatcaaattaaactaacacctatggataaagattcttactttct 41646149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 29456080 - 29456022
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttacttt 64  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29456080 caaagacattgatacttgatcaaattaaactaacacctatggataaagattcttacttt 29456022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 7573473 - 7573533
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  7573473 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 7573533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 16668068 - 16668128
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  16668068 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 16668128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 43564860 - 43564812
Alignment:
Q  16 gatactttatcaaattaaactaacacctatggataaagattcttacttt 64  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43564860 gatacttgatcaaattaaactaacacctatggataaagattcttacttt 43564812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 7573820 - 7573888
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||| |||||||    
T  7573820 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-caaaacctgtgtatttgaaatc 7573888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 16668415 - 16668483
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||| |||||||    
T  16668415 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-caaaacctgtgtatttgaaatc 16668483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 5968263 - 5968323
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| |||||    
T  5968263 caaagacacggatacttgatcaaattaaaccaacacctatgaataaagattcttagtttct 5968323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 41646441 - 41646510
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| |||||| |||||||||||||||| |||| | ||| ||||||||||| ||| |||||||    
T  41646441 caccatttcatatatgaaatgtcctttcaacaaaactctctcctttcccaaaacctgtgtatttgaaatc 41646510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 15408732 - 15408642
Alignment:
Q  142 tgctgtcttagaataaaaatgaatgaaaaaatattcattttt-atgcattttta-atatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||| |||| |||||||||   ||||||||||||||| ||||||||||  ||| ||||||||||||||||||| |||||| ||||||||    
T  15408732 tgctgacttggaattaaaatgaat---aaaatattcatttttcatgcatttttttataggtttccttccacatgcttaatgaacttttgatctc 15408642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 43564533 - 43564465
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaat 366  Q
    ||||||| ||| ||||||||||| | ||||||||| |||| ||||||||||||| ||| ||| ||||||    
T  43564533 caccattacatatatgaagtgtcgtctcaacaaaactctctctttttccaaaacttgtgtatttgaaat 43564465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 33809802 - 33809756
Alignment:
Q  187 catttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||| ||| ||||||||||||||||||||| || ||||||||||    
T  33809802 cattttttataggtttccttccacatgcttagtaaattcttgatctc 33809756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 35957730 - 35957775
Alignment:
Q  188 atttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||| ||| ||||||||||||||||||||| || ||||||||||    
T  35957730 attttttataggtttccttccacatgcttagtaaattcttgatctc 35957775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 6050968 - 6051012
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||    
T  6050968 ttttttatatgtttccttccacatgcttaatgagcttttgatctc 6051012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 13786870 - 13786707
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  13786870 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 13786771  T
Q  171 aatattcat-ttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  13786770 aatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 13786707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 25807272 - 25807435
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||||    
T  25807272 ccaaatcctcctccatcttatggcaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 25807371  T
Q  171 aatattca-tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  25807372 aatattcattttttatgcatttttaatatgtttccttccacatgttcagtgaactcttgatctc 25807435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 39624075 - 39623921
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaa 168  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||| || ||| |||||||||||||| ||    
T  39624075 atccaaatcctcgtccatcttatggcaattagttgagaaggaaaaatctctaatagttatagtaacaaccacatgttggcttggaataaaaatgaataaa 39623976  T
Q  169 aaaatattcatttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||          ||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  39623975 aaaa----------tatacattttttatatgtttccttccacatgtttagtgaactcttgatctc 39623921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 13786989 - 13786929
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13786989 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 13786929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 25807153 - 25807213
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  25807153 caaagacacggatacttgatcaaattaaactaacacctatggataaatattcttactttct 25807213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 22912174 - 22912228
Alignment:
Q  179 tttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  22912174 tttttatgcatttttaatatgcttccttccacatgtttagtgaactcttgatctc 22912228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 13786642 - 13786574
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||| |||||||    
T  13786642 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-caaaacctgtgtatttgaaatc 13786574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 22912048 - 22912097
Alignment:
Q  17 atactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  22912048 atacttgatcaaattaaactaacacatatggataaagattcttactttct 22912097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 25807500 - 25807568
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| ||| |||||||    
T  25807500 caccatttcatatatgaagtgtcctttcaacaaaactctctcttttt-caaaacctgtgtatttgaaatc 25807568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 39624182 - 39624133
Alignment:
Q  17 atactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  39624182 atacttgatcaaattaaactaacatctatggataaagattcttactttct 39624133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 23725628 - 23725682
Alignment:
Q  174 attcattt-ttatgcatttttaatatgtttccttccacatgcttagtgaactctt 227  Q
    |||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  23725628 attcatttgttatgcctttttgatatgtttccttccacatgtttagtgaactctt 23725682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 22912292 - 22912344
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaa 350  Q
    ||||||||||| |||||| |||||||||||||||| || || |||||||||||    
T  22912292 caccatttcatatatgaattgtcctttcaacaaaactccccatttttccaaaa 22912344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 20172583 - 20172421
Alignment:
Q  73 aaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatga-aaaa 171  Q
    |||||||| | |||||| ||||||||||||||||||||||||| ||||||| | |||| |||||||||||| || ||| |||||||||||||| | ||||    
T  20172583 aaatcctcctccatcttatggcaattagttgagaaggaaaaatatctaatagttatagtaacaaccacatgttggcttggaataaaaatgaataacaaaa 20172484  T
Q  172 atattcatt-tttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  20172483 atattaattgtttatgcttttttaatatgtttccttccacatgtttagtgaactcttgatctc 20172421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 918496 - 918659
Alignment:
Q  71 ccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaa 170  Q
    |||||||||| |  ||||| || |||||||| ||||||||||||||||||||    |||| |||||||||||| || ||| |||||||||||||| ||||    
T  918496 ccaaatcctcctctatcttatgacaattagtcgagaaggaaaaatctctaatggatatagcaacaaccacatgttggcttggaataaaaatgaataaaaa 918595  T
Q  171 aatattcatttt-tatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  918596 aatattcattttttatgcatttttaatatgtttccttacacatgtttagtgaactcttgatctc 918659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 11427669 - 11427820
Alignment:
Q  84 catcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatga-aaaaatattcatt-t 181  Q
    |||||| ||||||||||||||||||||||||| ||||||| | |||| |||||||||||| || ||| |||||||||||||| | ||||||||||||| |    
T  11427669 catcttatggcaattagttgagaaggaaaaatatctaatagttatagtaacaaccacatgttggcttggaataaaaatgaataacaaaaatattcattgt 11427768  T
Q  182 ttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||| |||||||||||||||||||||| || |||||||| ||||||||||    
T  11427769 ttatgcttttttaatatgtttccttccacgtgtttagtgaattcttgatctc 11427820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 10186987 - 10186820
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaa 168  Q
    |||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||| | |||| |||||||||||| |  |||  ||||||||||||| ||    
T  10186987 atcctaatcctcctccatcttatggcaattagttgagaagggaaaatctctaatagttatagcaacaaccacatgttagcttgaaataaaaatgaataaa 10186888  T
Q  169 aaaatattcat---ttttatgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||||   ||||||| |||||||||||||||| ||| ||||| ||||||||||||| |||||    
T  10186887 aaaatattcattttttttatggatttttaatatgtttcattctacatgtttagtgaactctttatctc 10186820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 4138911 - 4138801
Alignment:
Q  74 aatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaaaaaat 173  Q
    ||||||| | |||||| || |||||||||||||||||||||||||||||| | |||| |||||||||||| |  |||  ||||||||||||| |||||||    
T  4138911 aatcctcctccatcttatgacaattagttgagaaggaaaaatctctaatagttatagcaacaaccacatgttagcttgaaataaaaatgaataaaaaaat 4138812  T
Q  174 attcattttta 184  Q
    |||||| ||||    
T  4138811 attcatgttta 4138801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 4139034 - 4138974
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4139034 caaagacacggatacttgatcaaattaaactaacacctatggataaagattcttactttct 4138974  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10187094 - 10187045
Alignment:
Q  17 atactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10187094 atacttgatcaaattaaactaacacctatggataaagattcttactttct 10187045  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 11427887 - 11427951
Alignment:
Q  301 catttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaat 366  Q
    |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||    
T  11427887 catttcatatatgaagtgtcctttcaacaaaactctccc-ttttccaaaacctgtgtatgtgaaat 11427951  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 20172358 - 20172305
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaac 351  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  20172358 caccatttcatatatgaagtgtcctttcaacaaaactctccctttttccaaaac 20172305  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 918376 - 918436
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  918376 caaagatacggatacttgatcaaattaaactaacacctatggataaagattcttaatttct 918436  T

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Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 20172705 - 20172645
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  20172705 caaagacacggatacttgatcaaattaaaccaacacctatggataaagattcttagtttct 20172645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 4138718 - 4138650
Alignment:
Q  299 accatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||| | ||||||||| ||| |||||||    
T  4138718 accatttcatatatgaagtgtcctttcaacaaaactctcctttttcctaaaacctgtgtatttgaaatc 4138650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 10186755 - 10186687
Alignment:
Q  299 accatttcatgtatgaagtgtcctttcaacaaaaatctccctttttccaaaacctgtttatgtgaaatc 367  Q
    |||||||||| ||||||||||||||||||||||| ||||  |||| ||||||||||| ||| |||||||    
T  10186755 accatttcatatatgaagtgtcctttcaacaaaactctcatttttcccaaaacctgtgtatttgaaatc 10186687  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 11427553 - 11427606
Alignment:
Q  7 aaagacatggatactttatcaaattaaactaacacctatggataaagattctta 60  Q
    |||||||  ||||||| |||||||||||| ||||||||||||||||||||||||    
T  11427553 aaagacacagatacttgatcaaattaaaccaacacctatggataaagattctta 11427606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 35689986 - 35690031
Alignment:
Q  188 atttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  35689986 attttttataggtttccttccacatgcttagtgaaatcttgatctc 35690031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 26048058 - 26048027
Alignment:
Q  199 gtttccttccacatgcttagtgaactcttgat 230  Q
    ||||||||||||||||||||||||||||||||    
T  26048058 gtttccttccacatgcttagtgaactcttgat 26048027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 918725 - 918759
Alignment:
Q  298 caccatttcatgtatgaagtgtcctttcaacaaaa 332  Q
    ||||||||||| |||||||||||||||||||||||    
T  918725 caccatttcatatatgaagtgtcctttcaacaaaa 918759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 21361513 - 21361480
Alignment:
Q  200 tttccttccacatgcttagtgaactcttgatctc 233  Q
    |||||||||||||||||||||||||||| |||||    
T  21361513 tttccttccacatgcttagtgaactcttaatctc 21361480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 19388131 - 19388087
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||| |||||||||||||||||||  ||||||||||||||    
T  19388131 ttttttataagtttccttccacatgcttacggaactcttgatctc 19388087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 3891 - 3732
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaacaaccacatgctgtcttagaataaaaatgaatgaa 168  Q
    ||||||||| || | |||||| ||||||||||||||||||||||| || |||||| | |||| | |||||||||| || ||| |||||||||||||| ||    
T  3891 atccaaatcttcctccatcttatggcaattagttgagaaggaaaagtccctaatagttatagcagcaaccacatgttggcttggaataaaaatgaataaa 3792  T
Q  169 aaaatattcattt-ttatgcatttttaatatgtttccttccacatgcttagtgaactctt 227  Q
    |||| ||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||    
T  3791 aaaaaatttatttgttatgcattttttatatgtttccttccacatgtttagtgaactctt 3732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 4009 - 3951
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttacttt 64  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  4009 caaagacatgaatacttgatcaaattaaactaacacctatggataaagattcttacttt 3951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 4118 - 4064
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaata 123  Q
    ||||||||| || | |||||| ||||||||||||||||||||| ||||| |||||    
T  4118 atccaaatcttcctccatcttatggcaattagttgagaaggaagaatctttaata 4064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 11644 - 11584
Alignment:
Q  6 caaagacatggatactttatcaaattaaactaacacctatggataaagattcttactttct 66  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  11644 caaagacatggatacttgatcaaattaaactaatacctatagataaagattcttactttct 11584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 11526 - 11461
Alignment:
Q  69 atccaaatcctctttcatcttttggcaattagttgagaaggaaaaatctctaataataataggaac 134  Q
    ||||||||| || | |||||| ||| |||||||||||||||||||||| |||||| | ||||||||    
T  11526 atccaaatcttcctccatcttatgggaattagttgagaaggaaaaatccctaatagttataggaac 11461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 10554 - 10489
Alignment:
Q  169 aaaatattcattttt-atgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  10554 aaaatattcatttttcatgcattttttataggtttccttccacatgcttagtgaacttttgatctc 10489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 22621 - 22583
Alignment:
Q  195 atatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  22621 atatgtttccttccacatgcttagtgacctcttgatctc 22583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 136099 - 136055
Alignment:
Q  189 tttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  136099 ttttttatatgtttccttccacatgcttaatgagctcttgatctc 136055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1577 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1577
Description:

Target: scaffold1577; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 1543 - 1461
Alignment:
Q  152 gaataaaaatgaatgaaaaaatatt-cattttta-tgcatttttaatatgtttccttccacatgcttagtgaactcttgatctc 233  Q
    |||| ||||||||| |||||||||| |||||||| || |||||||||||||| ||||||||||  |||||  ||||||||||||    
T  1543 gaatgaaaatgaat-aaaaaatattacatttttactgtatttttaatatgttcccttccacatctttagtagactcttgatctc 1461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 1549 - 1585
Alignment:
Q  196 tatgtttccttccacatgcttagtgaactcttgatct 232  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  1549 tatgtttccttccacatgcttaatgagctcttgatct 1585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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