View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_19 (Length: 343)
Name: NF14695_low_19
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 30173423 - 30173082
Alignment:
| Q |
7 |
cggatgaatcttggaattcctcccaaaatccaaaaactgtgtcagcaaaactgacctcgtcggagctccggtaagcgggggctggagtagtggataactc |
106 |
Q |
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| T |
30173423 |
cggatgaatcttggaattcctcccaaaatccaaaaactgtgtcagcaaaactgacctcatcggagctccggtaagtagcggctggagtagcggataactc |
30173324 |
T |
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| Q |
107 |
tttccccatgatcagtatatgaataatgaaatgaatgtgaattctttttgataaagaaatgaatgtgaattactctaacctctatcacactctttatata |
206 |
Q |
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| T |
30173323 |
tttccccatga---gtatatgaataatgaaatgaatgtaaattctttttgataaagaaatgaatgtgaattactctaacctctatcacactctttatata |
30173227 |
T |
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| Q |
207 |
cacatacatgt--------atgtgtgtgtcttaatctcaatactatactagttaattaataaagtattttatttaatgtcacatggtgnnnnnnnnatcc |
298 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30173226 |
cacatacatgtatgtatgtatgtgtgtgtcttaatctcaatactatactagttaattaataaagtattttatttaatgtcacatggtgttttttttatcc |
30173127 |
T |
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| Q |
299 |
aatctatgacctttttgatggatcataatatatactgtatatgct |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30173126 |
aatctatgacctttttgatggatcataatatatactgtatatgct |
30173082 |
T |
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