View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_20 (Length: 335)
Name: NF14695_low_20
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 22860921 - 22860601
Alignment:
| Q |
14 |
atcaatttactgggacgaaaaacattggagtccattgtataaatttctttactgcttgtggttttgcaggtcaaaactgcagacactggatatatgtctc |
113 |
Q |
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| T |
22860921 |
atcattttactgggacgaaaaacactggagtccattgtataaatttctttactgcttgtggttttgcaggtcaaaactgcagacactggatatatgtctc |
22860822 |
T |
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| Q |
114 |
gtagattaatgaaagctctagaagacttatttttacattatgattacactgtaagagatgccaattgtagtcttgttcagttttgttatggtgatgatgg |
213 |
Q |
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| T |
22860821 |
gtagattaatgaaagctctagaagacttatttttacattatgattacactgtaagagatgccaattgtagtcttgttcagttttgttatggtgatgatgg |
22860722 |
T |
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| Q |
214 |
catggatccagcaggcatggaaggcaaaaatggaaaacctttaaattttgatcgattatttctcagaagcaaggtttaaaagcttcctttgctgttttat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22860721 |
catggatccagcaggcatggaaggcaaaaatggaaaacctttaaattttgatcgattatttctcagaagcaaggtttaaaagctt-ctttgctgttttat |
22860623 |
T |
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| Q |
314 |
tgagtttcattatgatattctt |
335 |
Q |
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|||||||||||||||| ||||| |
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| T |
22860622 |
tgagtttcattatgattttctt |
22860601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 22825161 - 22824856
Alignment:
| Q |
18 |
atttactgggacgaaaaacattggagtccattgtataaatttctttactgcttgtggttttgcaggtcaaaactgcagacactggatatatgtctcgtag |
117 |
Q |
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| T |
22825161 |
atttaccgggacgacaaacattgtagtccattttataagtttctttactgcttgtg-ttttgcaggtcaaaactgcagacactggatatatgtctcgtag |
22825063 |
T |
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| Q |
118 |
attaatgaaagctctagaagacttatttttacattatgattacactgtaagagatgccaattgtagtcttgttcagttttgttatggtgatgatggcatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
22825062 |
attaatgaaagctctagaagacttatttttacattatgattacaccgtaagagataccaatggtagtattgttcagttttgttatggtgatgatggcatg |
22824963 |
T |
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| Q |
218 |
gatccagcaggcatggaagg-caaaaatggaaaacctttaaattttgatcgattatttctcagaagcaaggtttaaaagcttcctttgctgttttattga |
316 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| | |
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| T |
22824962 |
gatccagcaggcatggaaggaaaaaaatggaaaaccattaaattttgatcggttatttctcagaagcaaggtttaaaagattcctttgttgttttattta |
22824863 |
T |
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| Q |
317 |
gtttcat |
323 |
Q |
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||||||| |
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| T |
22824862 |
gtttcat |
22824856 |
T |
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