View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_22 (Length: 331)
Name: NF14695_low_22
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 43142736 - 43142426
Alignment:
| Q |
18 |
catcctgcatacatcaagcataaatccaatttagtgagatgccgacaagattagaatatacaacctgagaaaggaagaaattcatgaaagggctcagaag |
117 |
Q |
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| T |
43142736 |
catcctgcatacatcaagcataaatccaatttagtgggatgccgacaagattagaatatacaacctgagaaaggaagaaattcatgaaagggctcagaag |
43142637 |
T |
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| Q |
118 |
gaactgaacagactttgacacagaagttttgctggttccatcacggtaacggggtataaaaaaccaaacttaaaatgagtttaaggttgcaaagcttaat |
217 |
Q |
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| T |
43142636 |
gaactgaacagactttgacacagaagttttgctggttccatcacggtaacggggtataaaaaaccaaacttaaaatgagtttaaggttgcaaagcttaat |
43142537 |
T |
|
| Q |
218 |
agcaaatgattaaaaacatgaatgcagaaatgggaggaaatatggactttattatacctcaaattctgatattagtcgtgatataggatggtaagccgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142536 |
agcaaatgattaaaaacatgaatgcagaaatgggaggaaatatggactttattatacctcaaattctgatattagtcgtgatataggatggtaagccgga |
43142437 |
T |
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| Q |
318 |
tcctctgtgct |
328 |
Q |
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||||||||||| |
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| T |
43142436 |
tcctctgtgct |
43142426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 43154510 - 43154404
Alignment:
| Q |
222 |
aatgattaaaaacatgaatgcagaaatgggaggaaatatggactttattatacctcaaattctgatattagtcgtgatataggatggtaagccggatcct |
321 |
Q |
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|||||||| ||| ||||| ||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
43154510 |
aatgattagaaaagtgaatttagaaatgggggaaaatgtggacttatttatacctcaaattctgatattagtcgtgatatagcatggtaagcaggatcct |
43154411 |
T |
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| Q |
322 |
ctgtgct |
328 |
Q |
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||||||| |
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| T |
43154410 |
ctgtgct |
43154404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 43154688 - 43154563
Alignment:
| Q |
18 |
catcctgcatacatcaa-gcataaatccaatttagtgagatgccgacaagattagaatatacaacctgagaaaggaagaaattcatgaaagggctcagaa |
116 |
Q |
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||||||||||| ||||| |||| |||||||||||||| ||||||| |||||||||| ||||||||| |||||||| ||||||||| ||||| |||||| |
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| T |
43154688 |
catcctgcatatatcaaagcatgcatccaatttagtgaaatgccgataagattagaacatacaacctatgaaaggaataaattcatgcaaggggtcagaa |
43154589 |
T |
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| Q |
117 |
ggaactgaacagactttgacacagaa |
142 |
Q |
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||||| | || ||||||||||||| |
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| T |
43154588 |
ggaacaaatcaagctttgacacagaa |
43154563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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