View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14695_low_23 (Length: 328)

Name: NF14695_low_23
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14695_low_23
NF14695_low_23
[»] chr1 (1 HSPs)
chr1 (22-317)||(1782479-1782774)
[»] chr7 (2 HSPs)
chr7 (31-262)||(25769481-25769705)
chr7 (31-262)||(25775062-25775286)
[»] scaffold1640 (1 HSPs)
scaffold1640 (31-262)||(191-415)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 1782479 - 1782774
Alignment:
Q  22 ccccccttgagcaaatcatgaaaccacacaagtttgttttcacagtaaaactttcaaatctctattttttggtctttcaaaaatggctgagagaatttcc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1782479 ccccccttgagcaaatcatgaaaccacacaagtttgttttcacagtaaaactttcaaatctctattttttggtctttcaaaaatggctgagagaatttcc 1782578  T
Q  122 atcggaaatgctggggacaaaaacctcaagcgcaaaatgatggagaagccggagccagagtcaaaatcagagaaggagccaaaggcaataccaccaacct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1782579 atcggaaatgctggggacaaaaacctcaagcgcaaaatgatggagaagccggagccagagtcaaaatcagagaaggagccaaaggcaataccaccaacct 1782678  T
Q  222 ctgaatcagaggttgaggatttgctgaccctaaggcttggcttccgcccaatgcccacttccaaagccttggagaagggcgaaccttcacgttcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1782679 ctgaatcagaggttgaggatttgctgaccctaaggcttggcttccacccaatgcccacttccaaagccttggagaagggcgaaccttcacgttcat 1782774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 25769705 - 25769481
Alignment:
Q  31 agcaaatcatgaaaccacacaagtttgttttcacagtaaaactttcaaatctctattttttggtctttcaaaaatggctgagagaatttccatcggaaat 130  Q
    |||||||||||||||||||||||||||||||||     | | |||||||||||| |||   |  |||||||||||| |||||||||||||||| ||||||    
T  25769705 agcaaatcatgaaaccacacaagtttgttttca-----atagtttcaaatctctttttgaag--ctttcaaaaatgtctgagagaatttccattggaaat 25769613  T
Q  131 gctggggacaaaaacctcaagcgcaaaatgatggagaagccggagccagagtcaaaatcagagaaggagccaaaggcaataccaccaacctctgaatcag 230  Q
    | || ||| | ||||||||| ||||||||| | ||| ||||  |    ||||  |||||| |||||||| |||||  ||| |||||||||||||||||      
T  25769612 gatgaggatagaaacctcaaacgcaaaatggtagaggagccaaaattggagttgaaatcaaagaaggagtcaaagataatgccaccaacctctgaatctc 25769513  T
Q  231 aggttgaggatttgctgaccctaaggcttggc 262  Q
    | ||||||||||| ||||||||||| ||||||    
T  25769512 atgttgaggattttctgaccctaagacttggc 25769481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 25775286 - 25775062
Alignment:
Q  31 agcaaatcatgaaaccacacaagtttgttttcacagtaaaactttcaaatctctattttttggtctttcaaaaatggctgagagaatttccatcggaaat 130  Q
    |||||||||||||||||||||||||||||||||     | | |||||||||||| ||||  ||| ||||||||||| | |||||||||| ||| ||||||    
T  25775286 agcaaatcatgaaaccacacaagtttgttttca-----atagtttcaaatctct-ttttgaggt-tttcaaaaatgtccgagagaattttcattggaaat 25775194  T
Q  131 gctggggacaaaaacctcaagcgcaaaatgatggagaagccggagccagagtcaaaatcagagaaggagccaaaggcaataccaccaacctctgaatcag 230  Q
    | || ||| | ||||||||| ||||||||| | |||  |||  |   |||||| |||||| |||||||| |||||  ||| |||||||||||||||||      
T  25775193 gatgaggatagaaacctcaaacgcaaaatggtagaggtgccaaaattagagtcgaaatcaaagaaggagtcaaagataatgccaccaacctctgaatctc 25775094  T
Q  231 aggttgaggatttgctgaccctaaggcttggc 262  Q
    | ||||||||||| ||||||||||| ||||||    
T  25775093 atgttgaggattttctgaccctaagacttggc 25775062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1640 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1640
Description:

Target: scaffold1640; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 191 - 415
Alignment:
Q  31 agcaaatcatgaaaccacacaagtttgttttcacagtaaaactttcaaatctctattttttggtctttcaaaaatggctgagagaatttccatcggaaat 130  Q
    |||||||||||||||||||||||||||||||||     | | |||||||||||| |||   | |  |||||||||| | |||||||||| ||| ||||||    
T  191 agcaaatcatgaaaccacacaagtttgttttca-----atagtttcaaatctctttttgaagat--ttcaaaaatgtcagagagaatttacattggaaat 283  T
Q  131 gctggggacaaaaacctcaagcgcaaaatgatggagaagccggagccagagtcaaaatcagagaaggagccaaaggcaataccaccaacctctgaatcag 230  Q
    | || ||| | ||||||||| ||||||||| | ||| ||||  |   |||||  |||||| |||||||| |||||  ||| |||||||||||||||||      
T  284 gatgaggatagaaacctcaaacgcaaaatggtagaggagccaaaattagagtagaaatcaaagaaggagtcaaagataatgccaccaacctctgaatctc 383  T
Q  231 aggttgaggatttgctgaccctaaggcttggc 262  Q
    | ||||||||||| ||||||||||| ||||||    
T  384 atgttgaggattttctgaccctaagacttggc 415  T

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