View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_24 (Length: 326)
Name: NF14695_low_24
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_24 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 8825 - 9133
Alignment:
| Q |
1 |
gcaacaaagaatactgaaaatgtcggcaggtatcttccgtgtaactctttccgtattctctaaaaacaaaatgaaagataagagaagggagtatatacac |
100 |
Q |
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| T |
8825 |
gcaacaaagaatactgaaaatgtcggcaggtatcttccgtgtaactctttccgtattctctaaaaacaaaacgaaagataagagaagggaatatatacac |
8924 |
T |
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| Q |
101 |
ttctgtataactttctctaataactctaaaaacaaagtaaagtatgatgcttttgtggtggtttgaagtaactccaatcaccaagtttgcatatgttgtt |
200 |
Q |
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| T |
8925 |
ttctgtatagctttctctaataactctaaaaacaaagtaaagtatgatgcttttgtggtggtttgaagtaactccaatcaccaagtttgcatatgttgtt |
9024 |
T |
|
| Q |
201 |
tttagtatgtactgctcccttttcctttttgacttattttaaactataatttcatatgttgatgctatcattttaaattaaccattccttcaacaaaata |
300 |
Q |
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| T |
9025 |
tttagtatgtactgctcccttttcctttttgacttattttaaactataatttcatatgttgatgctatcattttaaattaaccattccttcaacaaaata |
9124 |
T |
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| Q |
301 |
atcggaagt |
309 |
Q |
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| T |
9125 |
atcggaagt |
9133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 2631187 - 2630879
Alignment:
| Q |
1 |
gcaacaaagaatactgaaaatgtcggcaggtatcttccgtgtaactctttccgtattctctaaaaacaaaatgaaagataagagaagggagtatatacac |
100 |
Q |
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| T |
2631187 |
gcaacaaagaatactgaaaatgtcggcaggtatcttccgtgtaactctttccgtattctctaaaaacaaaacgaaagataagagaagggaatatatacac |
2631088 |
T |
|
| Q |
101 |
ttctgtataactttctctaataactctaaaaacaaagtaaagtatgatgcttttgtggtggtttgaagtaactccaatcaccaagtttgcatatgttgtt |
200 |
Q |
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| T |
2631087 |
ttctgtatagctttctctaataactctaaaaacaaagtaaagtatgatgcttttgtggtggtttgaagtaactccaatcaccaagtttgcatatgttgtt |
2630988 |
T |
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| Q |
201 |
tttagtatgtactgctcccttttcctttttgacttattttaaactataatttcatatgttgatgctatcattttaaattaaccattccttcaacaaaata |
300 |
Q |
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| T |
2630987 |
tttagtatgtactgctcccttttcctttttgacttattttaaactataatttcatatgttgatgctatcattttaaattaaccattccttcaacaaaata |
2630888 |
T |
|
| Q |
301 |
atcggaagt |
309 |
Q |
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||||||||| |
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| T |
2630887 |
atcggaagt |
2630879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 39083041 - 39083002
Alignment:
| Q |
5 |
caaagaatactgaaaatgtcggcaggtatcttccgtgtaa |
44 |
Q |
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| T |
39083041 |
caaagaatactgaaaatgttggcaggtaccttccgtgtaa |
39083002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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