View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14695_low_25 (Length: 319)
Name: NF14695_low_25
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 33499603 - 33499311
Alignment:
| Q |
12 |
tagcaaagggaaggaca--tataaggtttaaccaaactatttatagaagaggttcacctaataataaggttaataagcttgttttgcctnnnnnnnnn-t |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33499603 |
tagcaaagggaaggacacatataaggtttaaccaaactatttatagaagaggttcacctaataataaggttaataagcttgttttgcctaataaaaaaat |
33499504 |
T |
|
| Q |
109 |
ctaaatcccgacaagcttcatattttacgatatacatcatgacatacttacttcaaactatggaaatggatattccatttgtactaattttcaaagtaaa |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499503 |
ctaaatcctgacaagcttcatattttacgatatacatcatgacatacttacttcaaacgaaggaaatggatattccatttgtactaattttcaaagtaaa |
33499404 |
T |
|
| Q |
209 |
ctttattaatttaaataaaccatatgcagtttacaatattggaaaagcaaacacaaaaagcaaataatttaactagtttaaacaccataaaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499403 |
ctttattaatttaaataaaccatatgcagtttacaatattagaaaagcaaacacaaaaagcaaataatttaactagtttaaacaccataaaat |
33499311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 33486393 - 33486232
Alignment:
| Q |
131 |
ttttacgatatacatcatgacatacttacttcaaactatggaaatggatattccatttgtactaattttcaaagtaaactttattaatttaaataaacca |
230 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| || ||||||||||||| ||||| ||||||| |||||||| ||||| |||| ||||||||| |
|
|
| T |
33486393 |
ttttacgatataaatcatgacatactt----caaacgataaaaatggatattccgtttgt--taattttaaaagtaaattttatgaattcaaataaacct |
33486300 |
T |
|
| Q |
231 |
tatgcagtttacaatattggaaaagcaaacacaaaaagcaaataatt-taactagtttaaacaccataaaa |
300 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
33486299 |
tatgcagtttac---accggaaaagcaaacacaaaaagcatataattaaaactagtttaaacaccataaaa |
33486232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University