View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_27 (Length: 312)
Name: NF14695_low_27
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_27 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 37882323 - 37882609
Alignment:
| Q |
19 |
caaaaacgggagggtaccacattgacattggtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaagg |
118 |
Q |
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| T |
37882323 |
caaaaacgggagggtaccacattgacattggtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaagg |
37882422 |
T |
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| Q |
119 |
agtacgcccgcgtgtttttaagagaacaccgaaaagaccaagtttcccttgtttccaactcactatctcttaatatccttaacttgttaaaattttctct |
218 |
Q |
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| T |
37882423 |
agtacgcccgcgtgtttttaagagaacaccgaaaaaaccaagtttcccttgtttccaactcactatctcttaatatccttaacttgttaaaattttctct |
37882522 |
T |
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| Q |
219 |
aatctatgaaatnnnnnnnngatgattatcaataaacgttttatatgaagactgtgaaggttgttgcaatacaacacaggttctgctcgt |
308 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
37882523 |
aatctatgaaat---aaaaagatgattatcaataaacgttttatatgaagactgtgaaggttgttgcaatacaacacagttgctgctcgt |
37882609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 14862 - 14752
Alignment:
| Q |
49 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
148 |
Q |
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| T |
14862 |
gtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
14763 |
T |
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| Q |
149 |
gaaaagaccaa |
159 |
Q |
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| T |
14762 |
gaaaaaaccaa |
14752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 17604618 - 17604524
Alignment:
| Q |
50 |
tcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaa |
144 |
Q |
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| T |
17604618 |
tcatggtagagaagaaaaacggcacatagaccgtactcgagcttcagatcaatgtccccataagcaaagagtatgcccgattgtttttaagagaa |
17604524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 51195835 - 51195790
Alignment:
| Q |
49 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagcttt |
94 |
Q |
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| T |
51195835 |
gtcatggtagagaagaaaaaccgcgcacggaccgtactccagcttt |
51195790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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