View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14695_low_35 (Length: 247)

Name: NF14695_low_35
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14695_low_35
NF14695_low_35
[»] chr5 (18 HSPs)
chr5 (18-242)||(30339519-30339740)
chr5 (18-242)||(30059245-30059466)
chr5 (18-242)||(30748531-30748752)
chr5 (18-238)||(30398957-30399174)
chr5 (54-238)||(30434714-30434895)
chr5 (21-242)||(29852187-29852405)
chr5 (54-242)||(30243402-30243587)
chr5 (54-242)||(29871074-29871259)
chr5 (52-242)||(30482292-30482479)
chr5 (63-242)||(30678210-30678386)
chr5 (52-155)||(4380630-4380733)
chr5 (53-156)||(30205481-30205584)
chr5 (29-139)||(30474363-30474473)
chr5 (56-158)||(30203119-30203221)
chr5 (58-157)||(29709943-29710042)
chr5 (53-92)||(30714463-30714502)
chr5 (188-241)||(30205399-30205452)
chr5 (53-141)||(30429934-30430022)
[»] chr4 (2 HSPs)
chr4 (18-239)||(20297597-20297818)
chr4 (188-241)||(20303720-20303773)
[»] chr7 (1 HSPs)
chr7 (19-242)||(26706220-26706440)
[»] chr1 (3 HSPs)
chr1 (18-92)||(7582722-7582796)
chr1 (20-141)||(7098401-7098522)
chr1 (188-241)||(7582889-7582942)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 30339519 - 30339740
Alignment:
Q  18 atgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaaca 117  Q
    |||||||||||||||||||  |||||||||    ||||||||||| |||||||||||||||||||||||||||||  ||||  |||  | | ||||||||    
T  30339519 atgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgtcttccatctcttaaagacctctatgttgagggatgtaaca 30339618  T
Q  118 atgagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  |||||||   |||||||||||||||||||| |||||||||    
T  30339619 atgagttactgaggtcaatctctaccttccgtggtcttactcagcttatcttatatgaaggtgaagg---aataacatccttcccagaggggatgttcaa 30339715  T
Q  218 aaaccttacttctcttcaatctctg 242  Q
    |||||||||||||||||||||||||    
T  30339716 aaaccttacttctcttcaatctctg 30339740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30059466 - 30059245
Alignment:
Q  18 atgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaaca 117  Q
    |||||||||||||||||||  |||   |||  ||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||    
T  30059466 atgtttccttgtctttctaagttggatatctctgaatgccgtaaacttggactgccatgtcttccatctcttaaatccctcactgtatcggaatgtaaca 30059367  T
Q  118 atgagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||   ||||||||   ||||||||||||||||||| |||||||||    
T  30059366 atgagttactgaggtcaatctctaccttccgtggtcttactcagcttttcgtaaatgggggtgaagga---ataacatccttcccagaggggatgttcaa 30059270  T
Q  218 aaaccttacttctcttcaatctctg 242  Q
    |||||||||||||||||||||||||    
T  30059269 aaaccttacttctcttcaatctctg 30059245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30748752 - 30748531
Alignment:
Q  18 atgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaaca 117  Q
    |||||||||||||||||||  |||   |||   ||||||||| ||||||||||||||||||||||||||||||||| ||||  | |||  ||||||||||    
T  30748752 atgtttccttgtctttctaagttggatatctgggattgccctgaacttggactgccatgtcttccatctcttaaatccctccatttatgggaatgtaaca 30748653  T
Q  118 atgagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||    |||||||   |||||||||||| |||||||||||||||||    
T  30748652 atgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaaatagtggtgaagg---aataacatccttaccagaggagatgttcaa 30748556  T
Q  218 aaaccttacttctcttcaatctctg 242  Q
    |||||||||||||||||||||||||    
T  30748555 aaaccttacttctcttcaatctctg 30748531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 30399174 - 30398957
Alignment:
Q  18 atgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaaca 117  Q
    ||||||||||||||||||   |||| |||||  | |||||||||||||||| |||||||||||||||||||||||| ||||  |||||  | ||||||||    
T  30399174 atgtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgtcttccatctcttaaatccctctatgtattgggatgtaaca 30399075  T
Q  118 atgagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||| || || ||  |||   |||||||||||||||||||| |||||||||    
T  30399074 atgagttactgaggtcaatctctaccttccgtggtcttactgagctttccctagattacggtagagg---aataacatccttcccagaggggatgttcaa 30398978  T
Q  218 aaaccttacttctcttcaatc 238  Q
    |||||||||||||||||||||    
T  30398977 aaaccttacttctcttcaatc 30398957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 30434895 - 30434714
Alignment:
Q  54 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 153  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| |||  ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  30434895 tgccctaaacttggactgccatgtcttccatctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctctaccttccgtggtc 30434796  T
Q  154 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatc 238  Q
    ||||| |||||| |||| ||    |||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30434795 ttactcagcttaccctaaatagtggtgaagg---aataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatc 30434714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 29852405 - 29852187
Alignment:
Q  21 tttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatg 120  Q
    |||||||||||||||| ||||| ||||    |||||||| |||||||||||||||||||||||||||| ||| | |||  |||||  | |||||||||||    
T  29852405 tttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatgtcttccatctctgaaactgctccatgtattgggatgtaacaatg 29852306  T
Q  121 agttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaa 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||| ||      | |||||||||||||||||||||||||||||||||    
T  29852305 agttactgaggtcaatctctaccttccgtggtcttacaaagctttggctacatgacggt---ttcagaataacatccttcccagaggagatgttcaaaaa 29852209  T
Q  221 ccttacttctcttcaatctctg 242  Q
    ||||||||||||||||||||||    
T  29852208 ccttacttctcttcaatctctg 29852187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 30243402 - 30243587
Alignment:
Q  54 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 153  Q
    |||||||||||||||||||||||||||||||||||||||  ||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30243402 tgccctaaacttggactgccatgtcttccatctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 30243501  T
Q  154 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 242  Q
    ||||| ||||||  |||  | || ||   ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30243502 ttactcagcttaaactaattcacggtttcgg---aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30243587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 29871259 - 29871074
Alignment:
Q  54 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 153  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||| ||   ||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  29871259 tgccctaaaattggactgccatgtcttccatctcttaaagacctcgttgccgatccatgtaacaatgagttactgaggtcaatctctaccttttgtggtc 29871160  T
Q  154 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 242  Q
    ||||| |||||  ||||  |||| ||||||||   ||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  29871159 ttactcagcttgccctaagtgacggtgaagga---ataacatccttcccagaggggatgttcaaaaaccttacttctcttctatctctg 29871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 30482479 - 30482292
Alignment:
Q  52 attgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtgg 151  Q
    |||||| ||||||||||||||||| ||||||||||||| ||  ||||  |||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  30482479 attgccataaacttggactgccatctcttccatctcttgaaggcctctatgtggatggatgtaacaatgagttactgaggtcaatctctaccttccgtgg 30482380  T
Q  152 tcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 242  Q
    ||||||| |||||| ||||   ||  |||||||   |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  30482379 tcttactcagcttaccctaatggagggtgaagg---aataacatccttcccagaggggatgttcaaaaaccttacttgtcttcaatatctg 30482292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 30678210 - 30678386
Alignment:
Q  63 cttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactaagc 162  Q
    ||||||||||||||||||||||||||||||   ||||   |||  | ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30678210 cttggactgccatgtcttccatctcttaaagaactcgagatatggggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagc 30678309  T
Q  163 ttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 242  Q
    ||  ||||||| || ||   ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30678310 tttccctatataacggtttcgg---aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 4380733 - 4380630
Alignment:
Q  52 attgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtgg 151  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||| |||  | | |||||||||||||||||||||||||||||||||||| |||||    
T  4380733 attgccctaaacttggactgccatgtcatccatctcttaaacacctcgttgttgagggatgtaacaatgagttactgaggtcaatctctacctttcgtgg 4380634  T
Q  152 tctt 155  Q
    ||||    
T  4380633 tctt 4380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 30205584 - 30205481
Alignment:
Q  53 ttgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggt 152  Q
    ||||||||||||||||||||||||||||  ||||||||||  ||| | |||||  | ||||||||||||||| |||||||||||||||| |||  |||||    
T  30205584 ttgccctaaacttggactgccatgtcttgtatctcttaaaaacctagatgtattgggatgtaacaatgagttgctgaggtcaatctctagcttttgtggt 30205485  T
Q  153 ctta 156  Q
    ||||    
T  30205484 ctta 30205481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 30474473 - 30474363
Alignment:
Q  29 tctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactg 128  Q
    |||||||| |||||| || |||||||||||||||||||   ||||||| |||||||| ||||||  ||||  ||||| || |||||||||||||||||||    
T  30474473 tctttctaatttgaccattattgattgccctaaacttgtgttgccatgccttccatcccttaaagacctcattgtatttggatgtaacaatgagttactg 30474374  T
Q  129 aggtcaatctc 139  Q
    || ||||||||    
T  30474373 agatcaatctc 30474363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 30203221 - 30203119
Alignment:
Q  56 ccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtctt 155  Q
    ||||||||||  |||| |||||||||||| | |||||  |||   |||| |||||||||||||||||||||||||||| ||||||| ||||  |||||||    
T  30203221 ccctaaacttcaactgtcatgtcttccatatgttaaaaacctttatgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttctatggtctt 30203122  T
Q  156 act 158  Q
    |||    
T  30203121 act 30203119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 29709943 - 29710042
Alignment:
Q  58 ctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 157  Q
    ||||||||| |||| |||||||||| ||||||| |  ||||| ||| |  | ||||||||||||||||||||| |||||||||||||   ||||||||||    
T  29709943 ctaaacttgaactgtcatgtcttccgtctcttatagacctcgatgtttcgggatgtaacaatgagttactgagatcaatctctacctcatgtggtcttac 29710042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 30714463 - 30714502
Alignment:
Q  53 ttgccctaaacttggactgccatgtcttccatctcttaaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30714463 ttgccctaaacttggactgccatgtcttccatctcttaaa 30714502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 30205452 - 30205399
Alignment:
Q  188 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 241  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||||| ||||    
T  30205452 aataacatccttcccggacgggatgttcaaaaaccttacttgtcttcaagctct 30205399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 30430022 - 30429934
Alignment:
Q  53 ttgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctcta 141  Q
    ||||| |||||||||  ||||||| ||| ||||| |||||   |||  |||| ||| |||||||||||||||||||  |||||||||||    
T  30430022 ttgccttaaacttgggttgccatgcctttcatcttttaaagaactcattgtagatggatgtaacaatgagttactggagtcaatctcta 30429934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 20297597 - 20297818
Alignment:
Q  18 atgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaaca 117  Q
    |||||||||||||||||||  |||| ||||    | ||||||||||||||| |||||||||||||||||||||||| ||||| |||  ||  ||||||||    
T  20297597 atgtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtcttccatctcttaaatccctcgatgtcgatccatgtaaca 20297696  T
Q  118 atgagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaa 217  Q
    ||||||||||||| ||||||||||| ||||||||||||||| |||||  ||||  |||| |||||| ||||||||||||||||||||| | |||||||||    
T  20297697 atgagttactgagatcaatctctactttccgtggtcttactcagctttccctacttgacagtgaagaaataataacatccttcccagatgggatgttcaa 20297796  T
Q  218 aaaccttacttctcttcaatct 239  Q
    ||||||||||||||||||||||    
T  20297797 aaaccttacttctcttcaatct 20297818  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 20303720 - 20303773
Alignment:
Q  188 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 241  Q
    |||||||||||||| | ||| |||||||| ||||||||||| ||||||| ||||    
T  20303720 aataacatccttccaaaaggggatgttcataaaccttacttgtcttcaaactct 20303773  T

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Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 26706440 - 26706220
Alignment:
Q  19 tgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaa 118  Q
    |||||||||||||||||  |||||||||     |||||||||| || |||||||||||||||||||||||||||| ||||  ||| |  | |||||||||    
T  26706440 tgtttccttgtctttctcgtttgacaatatactattgccctaagctaggactgccatgtcttccatctcttaaatccctcaatgtttcgggatgtaacaa 26706341  T
Q  119 tgagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaa 218  Q
    ||||||||||||||||||| ||||||| |||||||||||| |||||| ||||||| || | |||||   |||||||||||||||||||| ||||||||||    
T  26706340 tgagttactgaggtcaatccctacctttcgtggtcttactgagcttaccctatataacggcgaagg---aataacatccttcccagaggggatgttcaaa 26706244  T
Q  219 aaccttacttctcttcaatctctg 242  Q
    ||||||||||||||||||||||||    
T  26706243 aaccttacttctcttcaatctctg 26706220  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 7582722 - 7582796
Alignment:
Q  18 atgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaa 92  Q
    ||||||||||||||||||| |||||  ||||   ||||||||||||||| ||| || |||||||||||| |||||    
T  7582722 atgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaa 7582796  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 7098522 - 7098401
Alignment:
Q  20 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 119  Q
    ||||||||||||||||| ||||  ||||    ||||||||||||||| ||| || |||||||||||| ||| |  ||||  |||| |||||||||| |||    
T  7098522 gtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtcttccatctgttagagacctctatgtagatgaatgtaataat 7098423  T
Q  120 gagttactgaggtcaatctcta 141  Q
     || | |||| |||||||||||    
T  7098422 aagatgctgaagtcaatctcta 7098401  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 7582889 - 7582942
Alignment:
Q  188 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 241  Q
    |||||||||||||||| ||||||||||   ||||||||||| ||| ||||||||    
T  7582889 aataacatccttcccaaaggagatgtttggaaaccttacttgtctccaatctct 7582942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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