View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_44 (Length: 220)
Name: NF14695_low_44
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_44 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 166342 - 166123
Alignment:
| Q |
1 |
tttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccaca |
100 |
Q |
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| T |
166342 |
tttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccaca |
166243 |
T |
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| Q |
101 |
aaaaattctgtgggattgagtacctgaaaataaataacaaagctaattagtttattaattttcatatatgaatgaatacatgttaatacaatacttactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
166242 |
aaaaattctgtgggattgagtacctgaaaataaataacaaagctaatcagtttattaattttcatatatgaatgaatacatattaatacaatacttactt |
166143 |
T |
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| Q |
201 |
ctaaccattttggagctcct |
220 |
Q |
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|||||||||||||||||||| |
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| T |
166142 |
ctaaccattttggagctcct |
166123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 105805 - 105651
Alignment:
| Q |
1 |
tttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccaca |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||||| |||||||||||| || ||| |||||||||||||||||||||| ||||| ||||||||| || |
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| T |
105805 |
tttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgctcaacaacaatgtccgca |
105706 |
T |
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| Q |
101 |
aaaaattctgtgggattgagtacctgaaaataaataacaaagctaattagtttat |
155 |
Q |
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| T |
105705 |
aaaaactcagtgggattgagtagctgaaaataaataataaaggtaattagtttat |
105651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 13054281 - 13054128
Alignment:
| Q |
2 |
ttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccacaa |
101 |
Q |
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|||||||||||| |||||||||| || || |||| || |||||||||||| |||| | |||||||||||||||| |||| ||||| ||||||||| | | |
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| T |
13054281 |
ttcttcctatgctctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcatattcaattacaatgtctgcga |
13054182 |
T |
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| Q |
102 |
aaaattctgtgggattgagtacctgaaaataaataacaaagctaattagtttat |
155 |
Q |
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| T |
13054181 |
aaaattcagtgggattcagtacctgcaaataaataacaaaggtaattagtttat |
13054128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 90967 - 91119
Alignment:
| Q |
2 |
ttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccacaa |
101 |
Q |
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||||||||||||||||||||||| ||||| ||||||| |||||||| ||||| | | ||||||||||||||||||||||||||| ||| |||||| | | |
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| T |
90967 |
ttcttcctatgccctggatatagcttcttgaacaaaactaaagcttcaatcgttgttccagtgcactcaacatattcatgttcaattaccatgtcctcga |
91066 |
T |
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| Q |
102 |
aaaattctgtgggattgagtacct-gaaaataaataacaaagctaattagttt |
153 |
Q |
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||| |||||||||||| |||| || ||||||||| || ||||||||||||||| |
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| T |
91067 |
aaagttctgtgggatttagtagctggaaaataaacaagaaagctaattagttt |
91119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 12136089 - 12136237
Alignment:
| Q |
1 |
tttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccaca |
100 |
Q |
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||||||||||||| ||||||||| |||||| ||||||| |||||||||||| |||||| ||||||| |||||||||||||| || || || || || || |
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| T |
12136089 |
tttcttcctatgctctggatataatttcttgaacaaaactaaagcttgaattgccgatccagtgcaatcaacatattcatgctcgaccacgatatcagca |
12136188 |
T |
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| Q |
101 |
aaaaattctgtgggattgagtacctgaaaataaataacaaagctaatta |
149 |
Q |
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| ||| |||| |||||||||| || ||||| ||||| |||| |||||| |
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| T |
12136189 |
ataaactctgcaggattgagtaactaaaaatcaataataaagttaatta |
12136237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 12136278 - 12136314
Alignment:
| Q |
184 |
taatacaatacttacttctaaccattttggagctcct |
220 |
Q |
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| T |
12136278 |
taatataatacttacttctaaccattctggagctcct |
12136314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 5687640 - 5687773
Alignment:
| Q |
8 |
ctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccacaaaaaatt |
107 |
Q |
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| T |
5687640 |
ctatgctcgggatataattttttaaacaaaaccatagcttgaatcgatgatgaagtgcattcaacatattcacgctcaactacaatttcctcaagaaatt |
5687739 |
T |
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| Q |
108 |
ctgtgggattgagtacctgaaaataaataacaaa |
141 |
Q |
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| | |||||||||| |||||||| ||||||||| |
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| T |
5687740 |
caattggattgagtagctgaaaattaataacaaa |
5687773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 5653030 - 5653112
Alignment:
| Q |
15 |
ctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtcc |
97 |
Q |
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| T |
5653030 |
ctggatatagcttcttaaacaaaactaaggcttgaattgctgatccagtgcattcaacatattcatgctcaacaacaatgtcc |
5653112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 5666570 - 5666701
Alignment:
| Q |
8 |
ctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccacaaaaaatt |
107 |
Q |
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|||||| | ||||||| ||| |||||||||| | ||||||||| | |||| |||||| |||||||||||| | ||||||||||| ||| | | ||||| |
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| T |
5666570 |
ctatgctcgggatatatttttttaaacaaaaccatagcttgaattgatgatgaagtgcattcaacatattcacgctcaactacaatttcctcgagaaatt |
5666669 |
T |
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| Q |
108 |
ctgtgggattgagtacctgaaaataaataaca |
139 |
Q |
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|| | |||||||||| |||||||| ||||||| |
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| T |
5666670 |
ctattggattgagtagctgaaaattaataaca |
5666701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 5719756 - 5719889
Alignment:
| Q |
8 |
ctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactacaatgtccacaaaaaatt |
107 |
Q |
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| T |
5719756 |
ctatgctcgggatatatttttttaaacaaaaccatagcttgaattgatgatgaagtgcattcaacatattcacgctcaactacattttcctcaagaaatt |
5719855 |
T |
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| Q |
108 |
ctgtgggattgagtacctgaaaataaataacaaa |
141 |
Q |
| |
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|| | |||||||||| |||||||| | ||||||| |
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| T |
5719856 |
ctattggattgagtagctgaaaattattaacaaa |
5719889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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