View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14695_low_46 (Length: 210)
Name: NF14695_low_46
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 36120723 - 36120903
Alignment:
| Q |
14 |
cacagagaccttgccttcactagcttatctgcaaactttaagtctcaagctcctacattcttgcttcagcttatgcttattcttcaatttctttccaagc |
113 |
Q |
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| T |
36120723 |
cacagagaccttgccttcactagcttatctccaaactttaagtctcaagctcctacattcttgcttcagcttatgcttattcttcaatttctttccaagc |
36120822 |
T |
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| Q |
114 |
tttcctacttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaag |
194 |
Q |
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| T |
36120823 |
tctcctacttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaag |
36120903 |
T |
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Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 40566324 - 40566504
Alignment:
| Q |
14 |
cacagagaccttgccttcactagcttatctgcaaactttaagtctcaagctcctacattcttgcttcagcttatgcttattcttcaatttctttccaagc |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566324 |
cacagagaccttgccttcactagcttatctccaaactttaagtctcaagctcctacattcttgcttcagcttatgcttattcttcaatttctttccaagc |
40566423 |
T |
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| Q |
114 |
tttcctacttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaag |
194 |
Q |
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| T |
40566424 |
tctcctacttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaag |
40566504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 38812541 - 38812364
Alignment:
| Q |
17 |
agagaccttgccttcactagcttatctgcaaactttaagtctcaagctcctacattcttgcttcagcttatgcttattcttcaatttctttccaagcttt |
116 |
Q |
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||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38812541 |
agagaccttgctttcattagcttatctccaaactttaagtctcaagctcctacattcttgcttcagcttatgcttattcttcaatttctttccaagcttt |
38812442 |
T |
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| Q |
117 |
cctacttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaag |
194 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38812441 |
cctacttcaaactaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaag |
38812364 |
T |
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