View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14695_low_6 (Length: 506)
Name: NF14695_low_6
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14695_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 46995063 - 46995539
Alignment:
| Q |
18 |
acttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactaccca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995063 |
acttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactaccca |
46995162 |
T |
|
| Q |
118 |
tcatcacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995163 |
tcatcacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattt |
46995262 |
T |
|
| Q |
218 |
tgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattccca |
317 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46995263 |
tgcaatagctagatgaatcttccatgatgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcgtaaactgaattccca |
46995362 |
T |
|
| Q |
318 |
aaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagtta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995363 |
aaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagtta |
46995462 |
T |
|
| Q |
418 |
tagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgct |
494 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46995463 |
tagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgct |
46995539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 46997323 - 46997799
Alignment:
| Q |
18 |
acttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactaccca |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
46997323 |
acttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaactaccca |
46997422 |
T |
|
| Q |
118 |
tcatcacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattt |
217 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||| ||| | ||| || || ||||||||||| || | | |||||| ||| | | |||||| || |
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| T |
46997423 |
tcatcacagtataaggatcaaaaaacagatccattcgatacacaaaaggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcataatt |
46997522 |
T |
|
| Q |
218 |
tgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattccca |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| |||| |||||||| || ||| |||||||||| |||||||| || | ||||||||| |
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| T |
46997523 |
tgcaatagccaggtgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatggaattccca |
46997622 |
T |
|
| Q |
318 |
aaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagtta |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||| | || |||| |||| |||| |||| |
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| T |
46997623 |
aaatattccttaggaagaggtggttccattctcgttcggttgtttacggccaatttgcaagttgttcgttgaccttgttgtaactgacgtgcacgcgtta |
46997722 |
T |
|
| Q |
418 |
tagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgct |
494 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||| |||| || |||||||||| || |||||| |
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|
| T |
46997723 |
gagatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgct |
46997799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 46974260 - 46974705
Alignment:
| Q |
18 |
acttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactaccca |
117 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
46974260 |
acttttccatcaaatttattagcatatccacttctaactgccaaaacttttcccattccaaattcattcccatacatattaaacctcggtgaactaccca |
46974359 |
T |
|
| Q |
118 |
tcatcacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattt |
217 |
Q |
| |
|
||||||||| ||||||||||| |||| || ||||| ||| | |||||| || ||||||||||| || | ||||| ||| | | ||||| || |
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|
| T |
46974360 |
tcatcacagtgtaaggatcaaaaaacaaatctgttcgatacacaaaaggagaacgaaaccactcttcaaccgacctacgcaccactttatcatcatgatt |
46974459 |
T |
|
| Q |
218 |
tgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattccca |
317 |
Q |
| |
|
| ||| ||| |||||||| |||||||||||| ||||||| ||||||||||||| || ||| || ||||||| ||||| |||| || |||||||||| |
|
|
| T |
46974460 |
tacaacagctagatgaattttccatgctgcccatcctagatcattctccagcaattcccctaccgtcgtttcagcactcaccgcatgaagtgaattccca |
46974559 |
T |
|
| Q |
318 |
aaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagtta |
417 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||| | || |||||| |||| ||||||||| |
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|
| T |
46974560 |
aaatattccttcggaagaggtggttccattctcgttcggttgtttgtagccagtttgcaagttgttctctgaccgtgttgtagttgacgtgcacgagtta |
46974659 |
T |
|
| Q |
418 |
tagatctccaaactagtgcagataaagattgaaacgaagagatttt |
463 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
46974660 |
tagatctccaaactaatgctgataaagattgaaacgaagaaatttt |
46974705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 46980249 - 46980694
Alignment:
| Q |
18 |
acttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactaccca |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||| |||||||||| ||||||| || | |
|
|
| T |
46980249 |
acttttccatcaaatttgttagcatatccacttctaactgccaaagcttttcccattccgaattcatttccatacgtattaaacctcggtgaaccactta |
46980348 |
T |
|
| Q |
118 |
tcatcacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattt |
217 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||| || | |||||| || ||||||| ||| || | ||||| ||| | | ||| | || |
|
|
| T |
46980349 |
tcatcacagtataaggatcaaagaacaaatccattcgatacaaaaaaggagaacgaaaccacttttcaaccgacctacgcaccactttatcatcgtgatt |
46980448 |
T |
|
| Q |
218 |
tgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattccca |
317 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||| ||| || ||||||| |||||| |||||| |||||||||| |
|
|
| T |
46980449 |
tgcaatagccacatgaattttccatgctgcccatcctagatcattctccagcaactctcctaccgtcgtttcagcactcactacataaagtgaattccca |
46980548 |
T |
|
| Q |
318 |
aaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagtta |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||| ||||||||| | || |||||| |||| || |||||| |
|
|
| T |
46980549 |
aaatattccttaggaagaggtggttccattcttgttcggttgtttgtagccattttgcaagttgttctctgaccgtgttgtagttgacgtgcatgagtta |
46980648 |
T |
|
| Q |
418 |
tagatctccaaactagtgcagataaagattgaaacgaagagatttt |
463 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
46980649 |
tagatctccaaactaatgctgataaagattgaaacgaagaaatttt |
46980694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 47000986 - 47001461
Alignment:
| Q |
18 |
acttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactaccca |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
47000986 |
acttttccatcaaatttgttagcatatcaacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaaccttggtgagctaccca |
47001085 |
T |
|
| Q |
118 |
tcatcacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccac-taattgtcgcacaactctgtgatcatatt |
216 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||| ||| |||||||| || | ||||||||| || ||||| | |||| ||| | | ||||| | |
|
|
| T |
47001086 |
tcatcacagtataaggatcaaagaacagatccattcgatacacaataggagaacgtatccactcttcaacataatt-ttgcaccactttatcatcatgat |
47001184 |
T |
|
| Q |
217 |
ttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattccc |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||||||||||| | ||||| | || |||||||| |
|
|
| T |
47001185 |
tcgcaatagccagatgaatcttccatgctgcccatcctaaatcattcctgaacaactcccctactgttgtttcagcaccaactgcgtgaatcgaattccc |
47001284 |
T |
|
| Q |
317 |
aaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagtt |
416 |
Q |
| |
|
||||||||| || ||||||| |||||| ||||| ||||||||||||| || ||| || ||||| ||||| ||| | ||| || ||| |||||||| |
|
|
| T |
47001285 |
aaaatattcatttggaagaggcggttctattctagttcggttgtttaaagacaacttacaagttgttctttgaccgcattgttgttgacatgcacgagtt |
47001384 |
T |
|
| Q |
417 |
atagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgc |
493 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||||||| || ||||| |
|
|
| T |
47001385 |
atagatctccaaactagtgctgataaagattgaaacgaagagattttgtttgtatcaaactctttgttagcttttgc |
47001461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 46955155 - 46955243
Alignment:
| Q |
24 |
ccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaact |
112 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| | | ||||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
46955155 |
ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact |
46955243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 46958008 - 46958097
Alignment:
| Q |
24 |
ccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaacta |
113 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| ||| ||||| ||||||||||||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
46958008 |
ccatcaaatttgtttgcatatccactcagaactgccatcgctttacccattccaaattcattcccatacatattgaaccttggcgaacta |
46958097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 46950868 - 46950915
Alignment:
| Q |
65 |
ttttcccattccaaattcactcccatacatattaaaccttggtgaact |
112 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
46950868 |
ttttcccattccaaattcatttccatacatattaaaccttggtgaact |
46950915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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