View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14695_low_8 (Length: 433)

Name: NF14695_low_8
Description: NF14695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14695_low_8
NF14695_low_8
[»] chr4 (48 HSPs)
chr4 (5-425)||(7765870-7766290)
chr4 (5-423)||(7786692-7787110)
chr4 (5-199)||(7773464-7773658)
chr4 (258-426)||(7878828-7878996)
chr4 (78-222)||(7771696-7771840)
chr4 (78-222)||(7790381-7790525)
chr4 (5-113)||(7877974-7878082)
chr4 (258-420)||(7771840-7772002)
chr4 (258-420)||(7790525-7790687)
chr4 (313-421)||(7773239-7773347)
chr4 (278-417)||(7779386-7779525)
chr4 (258-421)||(7908747-7908910)
chr4 (81-203)||(7237378-7237500)
chr4 (128-196)||(49043810-49043878)
chr4 (258-421)||(7237196-7237359)
chr4 (76-202)||(45365856-45365982)
chr4 (138-202)||(48864396-48864460)
chr4 (131-202)||(45371710-45371781)
chr4 (76-199)||(48870859-48870982)
chr4 (76-199)||(48876163-48876286)
chr4 (76-199)||(48886545-48886668)
chr4 (268-421)||(7823427-7823583)
chr4 (129-199)||(48853033-48853103)
chr4 (127-199)||(7878733-7878805)
chr4 (260-368)||(48903399-48903507)
chr4 (138-198)||(49038518-49038578)
chr4 (131-222)||(7908656-7908747)
chr4 (138-189)||(48147362-48147413)
chr4 (79-202)||(48156065-48156188)
chr4 (268-421)||(7801095-7801251)
chr4 (76-196)||(37826632-37826752)
chr4 (138-202)||(45384528-45384592)
chr4 (129-189)||(49048204-49048264)
chr4 (128-196)||(50666666-50666734)
chr4 (136-199)||(7813836-7813899)
chr4 (268-421)||(7813935-7814091)
chr4 (76-168)||(48899039-48899131)
chr4 (138-186)||(48903316-48903364)
chr4 (258-305)||(7773394-7773441)
chr4 (136-199)||(7800996-7801059)
chr4 (260-383)||(7905010-7905133)
chr4 (129-186)||(48861640-48861697)
chr4 (139-187)||(50672860-50672908)
chr4 (289-372)||(48147221-48147304)
chr4 (280-359)||(48871027-48871106)
chr4 (280-359)||(48876331-48876410)
chr4 (280-359)||(48886713-48886792)
chr4 (290-368)||(45365726-45365804)
[»] chr5 (6 HSPs)
chr5 (81-174)||(9120067-9120160)
chr5 (83-174)||(179364-179455)
chr5 (138-202)||(42561969-42562033)
chr5 (280-368)||(42561842-42561930)
chr5 (127-199)||(29688479-29688551)
chr5 (322-351)||(9120272-9120301)
[»] chr8 (4 HSPs)
chr8 (289-351)||(4030311-4030373)
chr8 (5-177)||(4962180-4962353)
chr8 (138-187)||(4031577-4031626)
chr8 (138-199)||(15349244-15349305)
[»] chr3 (5 HSPs)
chr3 (76-202)||(47451536-47451662)
chr3 (134-195)||(11024146-11024207)
chr3 (129-187)||(11005579-11005637)
chr3 (278-362)||(47451412-47451496)
chr3 (138-177)||(11015152-11015191)
[»] chr2 (1 HSPs)
chr2 (289-351)||(29350898-29350960)
[»] chr7 (2 HSPs)
chr7 (129-200)||(48884176-48884247)
chr7 (280-368)||(48884291-48884382)
[»] chr6 (3 HSPs)
chr6 (141-203)||(21979263-21979325)
chr6 (138-189)||(21016182-21016233)
chr6 (322-370)||(21979147-21979195)
[»] chr1 (2 HSPs)
chr1 (143-198)||(24367531-24367586)
chr1 (138-198)||(24416139-24416199)


Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 5 - 425
Target Start/End: Original strand, 7765870 - 7766290
Alignment:
Q  5 gatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765870 gatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctca 7765969  T
Q  105 gtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765970 gtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctca 7766069  T
Q  205 aaatgccattcctgatcatgaatttgaccctctgtactattccagatttgtggactactttcaccctatgtattctacagaaaatggtgatattattgga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766070 aaatgccattcctgatcatgaatttgaccctctgtactattccagatttgtggactactttcaccctatgtattctacagaaaatggtgatattattgga 7766169  T
Q  305 aaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766170 aaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccg 7766269  T
Q  405 agtctctactttcactctctg 425  Q
    |||||||||||||||||||||    
T  7766270 agtctctactttcactctctg 7766290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 423
Target Start/End: Original strand, 7786692 - 7787110
Alignment:
Q  5 gatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  7786692 gatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagagttggtacattctggtttgtgggtatctggggaatttctca 7786791  T
Q  105 gtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||| |||||| ||||||||||||||    
T  7786792 gtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttcttcctca 7786891  T
Q  205 aaatgccattcctgatcatgaatttgaccctctgtactattccagatttgtggactactttcaccctatgtattctacagaaaatggtgatattattgga 304  Q
      ||| |||||||| |||  | ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786892 gtatgtcattcctggtcactactttaaccctctgtactattccagatttgcggactactttcaccctatgtattctacagaaaatggtgatattattgga 7786991  T
Q  305 aaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7786992 aaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtatacag 7787091  T
Q  405 agtctctactttcactctc 423  Q
    |||||||||||||||||||    
T  7787092 agtctctactttcactctc 7787110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 7773658 - 7773464
Alignment:
Q  5 gatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctca 104  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||| |||||||| ||| |    
T  7773658 gatttaatggaaaggaaattgtttgagatgcctcttccaaataatgttcaccatagtgcattggtacattctggtttgtgggtatttggagaatatctta 7773559  T
Q  105 gtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 199  Q
    || |||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||  | |||||||||    
T  7773558 gtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctt 7773464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 258 - 426
Target Start/End: Original strand, 7878828 - 7878996
Alignment:
Q  258 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 357  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||| | ||  |||||||| |||||||||||||||||| ||||||||||| ||| |    
T  7878828 actactttcaacctatatattctacagaaaatggtgatattattggaagaaatcatggtactagattggtgaagtataatgataaaggacagttattaag 7878927  T
Q  358 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctgt 426  Q
    ||||| ||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  7878928 gcatcgctccttctgtaatagtccatccgaagttgtcatgtatacggagtctctactttcactccctgt 7878996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 7771696 - 7771840
Alignment:
Q  78 gtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtc 177  Q
    |||||||||||| |||||||||||||||| |||| | |||||||  |  |||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  178 atggactaagacacttgttcttcctcaaaatgccattcctgatca 222  Q
    ||||||||| || ||||||||| ||    ||||||||||||||||    
T  7771796 atggactaaaactcttgttctttctgttgatgccattcctgatca 7771840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 7790381 - 7790525
Alignment:
Q  78 gtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtc 177  Q
    |||||||||||| |||||||||||||||| |||| | |||||||  |  ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  178 atggactaagacacttgttcttcctcaaaatgccattcctgatca 222  Q
     |||||||| || ||||||||| ||    ||||||||||||||||    
T  7790481 ttggactaaaactcttgttctttctattgatgccattcctgatca 7790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 7877974 - 7878082
Alignment:
Q  5 gatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatctggagaatttctca 104  Q
    ||||||| ||||| || ||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||    
T  7877974 gatttaatggaaaagaaattgtttgagatgcctcttccaaataatgttgaccatagagcattagtacattctggtttgtgggtatttggagaatttctca 7878073  T
Q  105 gtatatggg 113  Q
    || ||||||    
T  7878074 gtctatggg 7878082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 420
Target Start/End: Original strand, 7771840 - 7772002
Alignment:
Q  258 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 357  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||||||| | ||  | |||||| |||||||||||||||||| ||||||||  | |||||    
T  7771840 actactttcaacctatatattctacaaaaaatggtgatattattggaagaaatcttagtactagattggtgaagtataatgataaaggacaactattagg 7771939  T
Q  358 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcact 420  Q
     || | ||||||||| ||||||| ||| ||| ||||| ||||||| || ||||| ||||||||    
T  7771940 acagcgctccttctgtaacagtcaatctgaaattgtcatgtatacagaatctctgctttcact 7772002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 420
Target Start/End: Original strand, 7790525 - 7790687
Alignment:
Q  258 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 357  Q
    |||||||||| ||||| ||||||||| || |||||||||||||||||| | ||  |||||||| |||||||||||||||||| ||||||||  | |||||    
T  7790525 actactttcaacctatatattctacaaaatatggtgatattattggaagaaatcatggtactagattggtgaagtataatgataaaggacaactattagg 7790624  T
Q  358 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcact 420  Q
     || | ||||||||| ||||||| ||| |||||| || ||||||| || ||||| ||||||||    
T  7790625 acagcgctccttctgtaacagtcaatctgaagttttcatgtatacagaatctctgctttcact 7790687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 421
Target Start/End: Complemental strand, 7773347 - 7773239
Alignment:
Q  313 tggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctcta 412  Q
    |||||||| |||||||||||||||| || |||||||||| ||| |||||||| ||||||| || |||||||||||||||||| ||||||| ||||||||     
T  7773347 tggtactagattggtgaagtataattaccaaggacagttattaaggcatcacgccttctgtaatagtccatccgaagttgtcatgtatactgagtctctg 7773248  T
Q  413 ctttcactc 421  Q
    |||||||||    
T  7773247 ctttcactc 7773239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 7779525 - 7779386
Alignment:
Q  278 tctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctgcaaca 377  Q
    |||||| ||||||||||||||||||||  | ||  |||||||| ||||||||||||||||||  |||||||| | ||| |||||| ||||||||| || |    
T  7779525 tctacaaaaaatggtgatattattggaggaaatcttggtactagattggtgaagtataatgatgaaggacagctattaaggcatcgctccttctgtaata 7779426  T
Q  378 gtccatccgaagttgtcgtgtataccgagtctctactttc 417  Q
    |||||| |||||||||| ||||||| |||||||| |||||    
T  7779425 gtccattcgaagttgtcatgtatacggagtctctgctttc 7779386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 421
Target Start/End: Original strand, 7908747 - 7908910
Alignment:
Q  258 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 357  Q
    ||||||||||||||||  | |||||| |||| |||||||||||||||| |  |  |  | | | |||||||||||||||||| ||||||||| | ||| |    
T  7908747 actactttcaccctatacactctacaaaaaacggtgatattattggaagaactcttaattccagattggtgaagtataatgataaaggacagctattaag 7908846  T
Q  358 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactc 421  Q
    ||||| | ||||||  || |||||||||||||||||| |||||||||||||||| |||||||||    
T  7908847 gcatcgcaccttctttaatagtccatccgaagttgtcatgtataccgagtctctgctttcactc 7908910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 7237500 - 7237378
Alignment:
Q  81 tgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatg 180  Q
    ||||||||| |||||||||||||||| |||||| | |||||  |  |||||||||||||| ||||||||||||||||||||||||| || ||||||  ||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  181 gactaagacacttgttcttcctc 203  Q
    |||||| || ||||| |||||||    
T  7237400 gactaaaactcttgtgcttcctc 7237378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 49043878 - 49043810
Alignment:
Q  128 aatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgtt 196  Q
    ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  49043878 aatgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 421
Target Start/End: Complemental strand, 7237359 - 7237196
Alignment:
Q  258 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 357  Q
    ||||||||||||||||  | |||||| ||||||||||||||||||||| |  |  || ||||| |||||||||||||||||| ||||||||  | ||||     
T  7237359 actactttcaccctatacactctacaaaaaatggtgatattattggaagaagtcatgatactagattggtgaagtataatgataaaggacaactattagc 7237260  T
Q  358 gcatcactccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactc 421  Q
    | | | | |||||||   ||||| ||| ||||||||| ||||||| |||||||| |||||||||    
T  7237259 ggaccgccccttctgttccagtcaatctgaagttgtcatgtatacagagtctctgctttcactc 7237196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 45365982 - 45365856
Alignment:
Q  76 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 175  Q
    |||||||||||||| |||||||||| ||||| | |||| || ||||  |  |||||||||| ||||||||||||||||||||||||| ||||||  ||||    
T  45365982 tggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcg 45365883  T
Q  176 tcatggactaagacacttgttcttcct 202  Q
    || ||||| ||||| |  |||||||||    
T  45365882 tcttggacaaagactcacgttcttcct 45365856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 48864396 - 48864460
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 202  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||    
T  48864396 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcct 48864460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 45371781 - 45371710
Alignment:
Q  131 gatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 202  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||  |||||||||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcct 45371710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 48870859 - 48870982
Alignment:
Q  76 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 175  Q
    |||||||||||||| ||| |||||||||||| |||  | || ||||  || | || ||||||||||||| ||||||||||| |||||||||||| | |||    
T  48870859 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48870958  T
Q  176 tcatggactaagacacttgttctt 199  Q
    || ||||| ||||| |||||||||    
T  48870959 tcttggacaaagactcttgttctt 48870982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 48876163 - 48876286
Alignment:
Q  76 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 175  Q
    |||||||||||||| ||| |||||||||||| |||  | || ||||  || | || ||||||||||||| ||||||||||| |||||||||||| | |||    
T  48876163 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48876262  T
Q  176 tcatggactaagacacttgttctt 199  Q
    || ||||| ||||| |||||||||    
T  48876263 tcttggacaaagactcttgttctt 48876286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 48886545 - 48886668
Alignment:
Q  76 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 175  Q
    |||||||||||||| ||| |||||||||||| |||  | || ||||  || | || ||||||||||||| ||||||||||| |||||||||||| | |||    
T  48886545 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48886644  T
Q  176 tcatggactaagacacttgttctt 199  Q
    || ||||| ||||| |||||||||    
T  48886645 tcttggacaaagactcttgttctt 48886668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 7823427 - 7823583
Alignment:
Q  268 ccctatgtattctacagaaaatggtga---tattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcac 364  Q
    ||||||||| || ||| ||||||||||   |||||||| || |  || |||| ||| |||||||||||| |||   ||||| ||| | |||| ||||||     
T  7823427 ccctatgtactccacaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttagagcatcaa 7823526  T
Q  365 tccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactc 421  Q
    || ||||| |||||||||||| |||||||| |||||||||||||||| |||||||||    
T  7823527 tcattctgtaacagtccatccaaagttgtcatgtataccgagtctctgctttcactc 7823583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 48853033 - 48853103
Alignment:
Q  129 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 199  Q
    |||||||| ||||||||||||| ||||||||||||||||||  |||||| ||||||||||| |||||||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 7878733 - 7878805
Alignment:
Q  127 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 199  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| || |||| ||| || |||||||||    
T  7878733 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctt 7878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 48903399 - 48903507
Alignment:
Q  260 tactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 359  Q
    ||||||||||| || | |||| || |||||||||| || ||||||| | | | |||||||| ||||||||||||||||||||||||||||||  ||| |     
T  48903399 tactttcacccaatatgttcttcaaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagt 48903498  T
Q  360 atcactcct 368  Q
    |||||||||    
T  48903499 atcactcct 48903507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 49038578 - 49038518
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 198  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  49038578 ttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 7908656 - 7908747
Alignment:
Q  131 gatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctcaaaatgccattcctgatca 222  Q
    |||||| |||||||||||||||||||||||||||||||| |||| || |||| ||| || ||||||||| ||    ||||||||||||||||    
T  7908656 gatacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcctgatca 7908747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 48147413 - 48147362
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagac 189  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  48147413 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagac 48147362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 48156188 - 48156065
Alignment:
Q  79 tttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtca 178  Q
    ||||||||||| |||||||||||||||| |||||| |   |||    ||||||| | | ||||||||||||||||||| |||||||||||| |||| ||     
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  179 tggactaagacacttgttcttcct 202  Q
    |||||||| || ||||| ||||||    
T  48156088 tggactaaaactcttgtccttcct 48156065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 7801095 - 7801251
Alignment:
Q  268 ccctatgtattctacagaaaatggtga---tattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcac 364  Q
    ||||||||| || ||| ||||||||||   |||||||| || |  || |||| ||| |||||||||||| |||   ||||| ||| | |||  ||||||     
T  7801095 ccctatgtactccacaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttaaagcatcaa 7801194  T
Q  365 tccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactc 421  Q
    || ||||| |||||||||||| |||||||| |||||||||||||||| |||||||||    
T  7801195 tcattctgtaacagtccatccaaagttgtcatgtataccgagtctctgctttcactc 7801251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 37826752 - 37826632
Alignment:
Q  76 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 175  Q
    |||||||||||||| |||||||||||| ||| ||||||  | ||  | |  |||| ||||| || || || |||||||||||||||||||| || |||||    
T  37826752 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcg 37826653  T
Q  176 tcatggactaagacacttgtt 196  Q
    || ||||||||||| ||||||    
T  37826652 tcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 45384592 - 45384528
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 202  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| | ||||||||||    
T  45384592 ttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttcct 45384528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 49048264 - 49048204
Alignment:
Q  129 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagac 189  Q
    |||||| | |||||||||||||||||||||| || |||||| |||||||||||||||||||    
T  49048264 atgatatagttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagac 49048204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 50666666 - 50666734
Alignment:
Q  128 aatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgtt 196  Q
    ||||||||||||||| ||||||||||| |||||||||||||| |||| || |||||||| || ||||||    
T  50666666 aatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 7813836 - 7813899
Alignment:
Q  136 aattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 199  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||| ||| || |||||||||    
T  7813836 aattgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctt 7813899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 7813935 - 7814091
Alignment:
Q  268 ccctatgtattctacagaaaatggtga---tattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcac 364  Q
    ||||||||| || ||| ||||||||||   |||||||| || |  || |||| ||| |||||||||||| |||   ||||| ||| | |||| ||||||     
T  7813935 ccctatgtactccacaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttagagcatcaa 7814034  T
Q  365 tccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactc 421  Q
    || ||||| |||  ||||||| |||||||| |||||||||||||||| |||||||||    
T  7814035 tcattctgtaacgctccatccaaagttgtcatgtataccgagtctctgctttcactc 7814091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 48899039 - 48899131
Alignment:
Q  76 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagt 168  Q
    |||||||||||| | |||||| ||| |||||||||||| |    ||  | ||||||||||| ||||||||||||||||||||||||| |||||    
T  48899039 tggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagt 48899131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 48903316 - 48903364
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaa 186  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 7773441 - 7773394
Alignment:
Q  258 actactttcaccctatgtattctacagaaaatggtgatattattggaa 305  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  7773441 actactttcaacctatatattctacaaaaaatggtgatattattggaa 7773394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 7800996 - 7801059
Alignment:
Q  136 aattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 199  Q
    |||||||||||||||| ||||||| ||||||||| ||||||| |||| ||| || |||||||||    
T  7800996 aattgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 7801059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 383
Target Start/End: Original strand, 7905010 - 7905133
Alignment:
Q  260 tactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 359  Q
    ||||||||||||||||| |||||| | |||||||||||||| |||  | ||  ||||| || |||||| |||||||||||  |||| ||| | ||| |||    
T  7905010 tactttcaccctatgtactctacaaagaatggtgatattatcggaggaaatcttggtagtagattggtaaagtataatgatgaagggcagctattaaggc 7905109  T
Q  360 atcactccttctgcaacagtccat 383  Q
    ||| |||| |||| || |||||||    
T  7905110 atcgctccatctgtaatagtccat 7905133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 48861640 - 48861697
Alignment:
Q  129 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaa 186  Q
    |||||||| ||||||||||||| || ||||||||||||||| ||| ||| ||||||||    
T  48861640 atgatacatttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 50672860 - 50672908
Alignment:
Q  139 tgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaag 187  Q
    ||||||||||||||||||| |||||||| || ||||||| |||||||||    
T  50672860 tgaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 48147304 - 48147221
Alignment:
Q  289 tggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactccttctg 372  Q
    |||||| |||||||||| | ||||||  ||| ||||| |||||||||| |||||||||||| || ||| |||| |||| |||||    
T  48147304 tggtgacattattggaacaaatggtgaaactgaattgttgaagtataacgacaaaggacagcttctagagcataactcattctg 48147221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 48871027 - 48871106
Alignment:
Q  280 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 359  Q
    |||| ||| ||||||||||||||||  | || |||||| |  ||||||||||||| ||||||| |||||||| |||||||    
T  48871027 tacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggc 48871106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 48876331 - 48876410
Alignment:
Q  280 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 359  Q
    |||| ||| ||||||||||||||||  | || |||||| |  ||||||||||||| ||||||| |||||||| |||||||    
T  48876331 tacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggc 48876410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 48886713 - 48886792
Alignment:
Q  280 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggc 359  Q
    |||| ||| ||||||||||||||||  | || |||||| |  ||||||||||||| ||||||| |||||||| |||||||    
T  48886713 tacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggc 48886792  T

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Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 45365804 - 45365726
Alignment:
Q  290 ggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactcct 368  Q
    |||||||||||||||| | ||| |  || || ||||||||||||||||||  |||||||||| ||||| |||| |||||    
T  45365804 ggtgatattattggaacagatgatcttaatagattggtgaagtataatgatgaaggacagttgttaggacatcgctcct 45365726  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 9120067 - 9120160
Alignment:
Q  81 tgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattc 174  Q
    ||||||||| ||||||||||||||||||||||| || ||||  | ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9120067 tgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattc 9120160  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 179364 - 179455
Alignment:
Q  83 tgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattc 174  Q
    ||||||| |||| |||||||||||||||||| || ||||  |  |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattc 179455  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 42562033 - 42561969
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 202  Q
    |||| ||||||||||||||||||||||||||| |||| || ||||||||||  ||||||||||||    
T  42562033 ttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttcttcct 42561969  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 42561930 - 42561842
Alignment:
Q  280 tacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactcct 368  Q
    |||| ||||||||||||||||||||| | ||||||||||   ||||||||| ||||| ||||||||  ||||| ||| |||| ||||||    
T  42561930 tacaaaaaatggtgatattattggaacagatggtggtaccggattggtgaaatataacgacaaaggggagtttctagagcataactcct 42561842  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 29688479 - 29688551
Alignment:
Q  127 taatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 199  Q
    ||||| |||| |||||||||||||||||||| ||||||| ||| | ||||| ||||| ||||| || ||||||    
T  29688479 taatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctt 29688551  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 351
Target Start/End: Original strand, 9120272 - 9120301
Alignment:
Q  322 attggtgaagtataatgacaaaggacagtt 351  Q
    ||||||||||||||||||||||||||||||    
T  9120272 attggtgaagtataatgacaaaggacagtt 9120301  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 4030373 - 4030311
Alignment:
Q  289 tggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtt 351  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  4030373 tggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagtt 4030311  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 4962353 - 4962180
Alignment:
Q  5 gatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagc-attggtacattctggtttgtgggtatctggagaatttctc 103  Q
    ||||||| |||||||| |||||| |||||||||||||| |||||| ||||| |   | |  |  |||  || |||||||||||||| |||||||||||||    
T  4962353 gatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgactatgaacctgtctgtaagttatggtttgtgggtatttggagaatttctc 4962254  T
Q  104 agtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtc 177  Q
    ||| ||||||  | ||||  |   |||  || | ||||||||||||||||||||||||||||| || |||||||    
T  4962253 agtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaactgcattcgtc 4962180  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 4031626 - 4031577
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaag 187  Q
    ||||||||||||| ||||||||||||||| || ||||||| |||||||||    
T  4031626 ttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 15349244 - 15349305
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 199  Q
    |||||||||||||||||||||||||||||||| | || || ||||| ||||  |||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 15349305  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 47451662 - 47451536
Alignment:
Q  76 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 175  Q
    |||||||||||||| |||||||||||| ||| || |||||  ||||  |  |||||||| | |||||||||||||||||||||||||||||||  |||||    
T  47451662 tggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcg 47451563  T
Q  176 tcatggactaagacacttgttcttcct 202  Q
    || |||   ||||| ||||||||||||    
T  47451562 tcttgggaaaagactcttgttcttcct 47451536  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 11024207 - 11024146
Alignment:
Q  134 acaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgt 195  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||    
T  11024207 acaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 11005637 - 11005579
Alignment:
Q  129 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaag 187  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  11005637 atgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaag 11005579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 47451496 - 47451412
Alignment:
Q  278 tctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatc 362  Q
    |||||| ||| ||||||||||||||||| | ||| || |||   |||||| ||||||||||||||||||||||| |||| |||||    
T  47451496 tctacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatc 47451412  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 11015191 - 11015152
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtc 177  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  11015191 ttgaaatatgggttatgaaagaatacaaagtgcattcgtc 11015152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 29350898 - 29350960
Alignment:
Q  289 tggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtt 351  Q
    |||||||||||||||||   ||||||||||| |||||||||||||| ||||||||||||||||    
T  29350898 tggtgatattattggaacggatggtggtactgaattggtgaagtattatgacaaaggacagtt 29350960  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 48884176 - 48884247
Alignment:
Q  129 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttc 200  Q
    |||||| | ||||||||| |||||||||||||||||||||| ||  ||| ||||||||||| ||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttcttc 48884247  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 48884291 - 48884382
Alignment:
Q  280 tacagaaaatggtgatattattggaa---aatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagggcatcactcct 368  Q
    |||| ||| |||||||||||||||||   |  ||||| || ||| |||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  48884291 tacaaaaagtggtgatattattggaatagatcatggtcgtgctagattgatgaagtataatgataaaggacagttgttagggcatcactcct 48884382  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 21979325 - 21979263
Alignment:
Q  141 aaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcctc 203  Q
    |||||||||||||||||||||||||||||  ||| || |||| ||||| ||||||||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttcttcctc 21979263  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 21016182 - 21016233
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagac 189  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  21016182 ttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagac 21016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 21979195 - 21979147
Alignment:
Q  322 attggtgaagtataatgacaaaggacagtttttagggcatcactccttc 370  Q
    |||||||||||| ||||| ||||||||||| |||||||| |||| ||||    
T  21979195 attggtgaagtacaatgataaaggacagttgttagggcagcactacttc 21979147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  143 atatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 198  Q
    |||||||| ||| |||||||||||||| ||||||| |||||||| || ||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 24416139 - 24416199
Alignment:
Q  138 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 198  Q
    |||| ||||||||||||||||||||||||| | | || || |||||||| || ||||||||    
T  24416139 ttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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