View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14696_high_8 (Length: 324)
Name: NF14696_high_8
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 2750536 - 2750848
Alignment:
| Q |
7 |
tgcctttactcaacacaaagtagcttgccgtcacaaagtagctgacaaatatcatgctgcaatacaaaaatgccagaaaaattacagagg--------ag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2750536 |
tgcctttactcaacacaaagtagcttgccgtcacaaagtagctgacaaatatcatgctgcaatacaaaaatgccagaaaaattacagacagtgatatcaa |
2750635 |
T |
|
| Q |
99 |
agtgacatttactttactacaacataaatttggttcccggcgttcgaaacattatatctagacagtgacagaaaagatgaaagagtccaacacctgtaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2750636 |
agtgacatttactttactacaacataaatttggttcccggcgttccaaacattatatctagacagtgacagaaaagatgaaagagtccaacacctgtaac |
2750735 |
T |
|
| Q |
199 |
ctaagagggcaaagtgaaacctaaaaataacattgtgtttacctcaaggctaagaggagaagtggtaggataatagcgagcggcaacttggccatcctta |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2750736 |
ctaagagggcaaagtgaaacctaaaaataacattgtgtttacctcaaggctaagaggagaagtggtaggataatagcgagcggcaacttggccatcctta |
2750835 |
T |
|
| Q |
299 |
tcaatcaaaaact |
311 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2750836 |
tcaatcaaaaact |
2750848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 40893748 - 40893684
Alignment:
| Q |
238 |
tacctcaaggctaagaggagaagtggtaggataatagcgagcggcaacttggccatccttatcaa |
302 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| ||| | | ||||| |||||||| |||| |
|
|
| T |
40893748 |
tacctcaaggctaagaggagacgtggtgggataatatcgatccaccacttgaccatccttgtcaa |
40893684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University