View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_1 (Length: 391)
Name: NF14696_low_1
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 29 - 383
Target Start/End: Original strand, 45461711 - 45462075
Alignment:
| Q |
29 |
gttggttggttgttatctgttgttaattatctataataaccatccatccaaaaataataaaattaattaagaagcaaaagtcgtacaaattaaagag--- |
125 |
Q |
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| T |
45461711 |
gttggttggttgttatttgttgttaattatctataataaccatccatccaaaaataataaaattaattaagaagcaaaagtcgtacaaattaaagagcat |
45461810 |
T |
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| Q |
126 |
-------aggggaagcaagatgaaaatgaaatgagtaccgtttttgctgtggttgatacgggtagagagagcaagacatagacgcctgacagggaaaatc |
218 |
Q |
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| T |
45461811 |
gaaattgaggggaagcaagatgaaaatgaaatgagtaccgtttttgcggtggttgatacgggtagagagagcaagacatagacgcctgacagggaaaatc |
45461910 |
T |
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| Q |
219 |
atagtttgccaaatatgcatgattttgttcttgtctttaacaactccttcacatagtactactgtcttcttcttccttttcttgttctttccatgccctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461911 |
atagtttgccaaatatgcatgattttgttcttgtctttaacaactccttcacatagtactactgtcttcttcttccttttcttgttctttccatgccctt |
45462010 |
T |
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| Q |
319 |
gcctatgtggcaacactactctctttgaccaggccagtgccgctactctgattttcttcttcttc |
383 |
Q |
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| T |
45462011 |
gcctatgtggcaacactattctctttgaccaggccagtgccgctactctgattttcttcttcttc |
45462075 |
T |
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