View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_11 (Length: 288)
Name: NF14696_low_11
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 42898988 - 42898697
Alignment:
| Q |
1 |
ggaattacggttcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctgaaaatcatataatatataaacaaac |
100 |
Q |
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| T |
42898988 |
ggaattacggttcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctgaaaatcatataatatataaacaaac |
42898889 |
T |
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| Q |
101 |
a----aacacaaatactgttactaaaatgctataacagtcaagaaatattcactgtcactcattctctc-------------ttttttagtctcactctc |
183 |
Q |
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| T |
42898888 |
aaacaaacacaaatactgttactaaaatgctataacagtcaagaaatattcactgtcactcattctctctttttcagtcattttttttagtctcactctc |
42898789 |
T |
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| Q |
184 |
cttagacttgagagtaccaagtgcatgtcgggataaatgtaaattttccggtgttagcgtgattttgttgaaactccgaagcataacttttg |
275 |
Q |
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| T |
42898788 |
cttagacttgagagtactaagtgcatgttgggataaatgtaaattttccggtgttagcgtgattttgttgaaactccgaagcataacttttg |
42898697 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 50786101 - 50786145
Alignment:
| Q |
31 |
aatgcatcacagaaggctctgtgagttatgaaactgtccctcctg |
75 |
Q |
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| T |
50786101 |
aatgcatcacagaaggctctgtgagttatgaaactgtctctcctg |
50786145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 4160929 - 4160895
Alignment:
| Q |
37 |
tcacagaaggctctgtgagttatgaaactgtccct |
71 |
Q |
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| T |
4160929 |
tcacagaaggctctgtgagtgatgaaactgtccct |
4160895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 5787997 - 5788056
Alignment:
| Q |
12 |
tcttgaactctcctcagctaatgcatcacagaaggctctgtgagttatgaaactgtccct |
71 |
Q |
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| T |
5787997 |
tcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaaactgtccct |
5788056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 30517352 - 30517399
Alignment:
| Q |
28 |
gctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctg |
75 |
Q |
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| T |
30517352 |
gctaaggcatcacaaaaggctctgtgagttatgaagctgtctctcctg |
30517399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 44150153 - 44150203
Alignment:
| Q |
25 |
tcagctaatgcatcacagaaggctctgtgagttatgaaactgtccctcctg |
75 |
Q |
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|||| ||||||||||||||| |||||||| ||||| |||||||| |||||| |
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| T |
44150153 |
tcagttaatgcatcacagaatgctctgtgggttataaaactgtctctcctg |
44150203 |
T |
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