View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_15 (Length: 249)
Name: NF14696_low_15
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 9971493 - 9971271
Alignment:
| Q |
12 |
aagaatatagatataacaaaaattgaacataaacactactcaagtagtaaagcgataacaaaatcaaaggatctttccacagttaaacgaatgaacaact |
111 |
Q |
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| T |
9971493 |
aagaatatagatataacaaaaattgaacataaacactactcaagtagtaaagcgataacaaaatcaaaggatctttccacagtgaaacaaatgaacaact |
9971394 |
T |
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| Q |
112 |
aaaacaacactagaaacccatctaaccttttatctcaaacatccaaccccaaccaaacaggaggaagattaggaacagaacccaacagtcaatca---aa |
208 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
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| T |
9971393 |
aaaacaacactagatatccatctaaccttttatctcaaacatccaaccccaaccaaactggaggaagattaggaacagaatccaacagtcaatcaaataa |
9971294 |
T |
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| Q |
209 |
tccaagacaaatccgtcacataa |
231 |
Q |
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| T |
9971293 |
ttcaagacaaatccgtcacataa |
9971271 |
T |
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