View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_16 (Length: 247)
Name: NF14696_low_16
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 16954926 - 16954776
Alignment:
| Q |
1 |
cattcttaatggatgtcttcttcttgaatctcttgacctgggattatgttttagtttggatttgagtgaaagtttgaggaaaaggtgctatgatcaaatc |
100 |
Q |
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| T |
16954926 |
cattctaaatggatgtcctcttcttgaatcgcttgacctaggattatgttttagtttggatttgagtgaaagtttgaggaaaaggtgttatgatcaaatc |
16954827 |
T |
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| Q |
101 |
aaagattgtaaacttccaatagattttcataaatttttacaaatgttcgaa |
151 |
Q |
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| T |
16954826 |
aaagattgtaaacttccaatagattttcataaatttttacaaatgttcgaa |
16954776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 16965505 - 16965381
Alignment:
| Q |
1 |
cattcttaatggatgtcttcttcttgaatctcttgacctgggattatgttttagtttggatttgagtgaaagtttgaggaaaaggtgctatgatcaaatc |
100 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
16965505 |
cattcttaatgaatgttctcttcttgaatctcttgacctgggattatgttttaggttggattggagtgaaagattgaggaaaaggtgctatgatcaaatc |
16965406 |
T |
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| Q |
101 |
aaagattgtaaacttccaatagatt |
125 |
Q |
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| T |
16965405 |
aaagattttaaacttccagtagatt |
16965381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 16954702 - 16954613
Alignment:
| Q |
158 |
ctattgttgtgatatttacttattcctgtcgtagaggtttgtttaagtgacggtattgaaatttgtggccagttatcgatggttcatctc |
247 |
Q |
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| T |
16954702 |
ctattgttgtgatatttacttattcctgtcgtagaggtttgtttaagtgacggtattgaaatttgtggccagttatcgatggttcatctc |
16954613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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