View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_17 (Length: 244)
Name: NF14696_low_17
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 16954983 - 16955203
Alignment:
| Q |
5 |
tcgaggcattgttttagcgatagccaaaaaatcgtcctcagatatctcttccttatcgaaagtgagctgacattcaagtgatttcagaagaggacaacaa |
104 |
Q |
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| T |
16954983 |
tcgaggcattgttttagcgacagccaaaaactcgtcatcagatatttcttccttatcgaaagtgagatgacattccagtgatttcagaagaggacaacaa |
16955082 |
T |
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| Q |
105 |
ccacctacaacttcaatagaattctgggacagtttcatgcgatataaaacttcaagctcctctatcatcgaaagtttcttcatgccttcaataaatcctt |
204 |
Q |
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| T |
16955083 |
ccacctacagcttcaatagaattctgggacagtttgatgggatataaaacttcaagctcctctatcatcgaaagtttcttcatgcctccaataaatcctt |
16955182 |
T |
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| Q |
205 |
tttctgaaaggttatcagcag |
225 |
Q |
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||||||||||||||||||||| |
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| T |
16955183 |
tttctgaaaggttatcagcag |
16955203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 16965638 - 16965782
Alignment:
| Q |
81 |
agtgatttcagaagaggacaacaaccacctacaacttcaatagaattctgggacagtttcatgcgatataaaacttcaagctcctctatcatcgaaagtt |
180 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||| |||||| |||||||||| | | ||||| ||| ||| |||||||||||||||||||||| |
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| T |
16965638 |
agtgattttagaagaggacaagatccacctacaacttcaatggaattccgggacagtttgaagggatatgaaatttcgagctcctctatcatcgaaagtt |
16965737 |
T |
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| Q |
181 |
tcttcatgccttcaataaatcctttttctgaaaggttatcagcag |
225 |
Q |
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| T |
16965738 |
tttttatgccttcaataaatcctttttctgaaaggctatcagcag |
16965782 |
T |
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