View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14696_low_19 (Length: 201)

Name: NF14696_low_19
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14696_low_19
NF14696_low_19
[»] scaffold0400 (2 HSPs)
scaffold0400 (19-187)||(12829-12997)
scaffold0400 (19-179)||(6541-6701)
[»] scaffold0365 (2 HSPs)
scaffold0365 (19-187)||(13472-13640)
scaffold0365 (19-179)||(7185-7345)
[»] chr1 (11 HSPs)
chr1 (19-187)||(14532639-14532807)
chr1 (58-181)||(14504071-14504194)
chr1 (19-186)||(14482035-14482202)
chr1 (58-187)||(15002196-15002325)
chr1 (58-187)||(15032547-15032676)
chr1 (58-187)||(15037109-15037238)
chr1 (19-181)||(14467853-14468015)
chr1 (58-187)||(15011089-15011218)
chr1 (34-187)||(15040809-15040962)
chr1 (58-187)||(14522518-14522647)
chr1 (58-187)||(15017204-15017333)
[»] chr7 (3 HSPs)
chr7 (58-187)||(16102969-16103098)
chr7 (56-187)||(14605985-14606116)
chr7 (75-187)||(16025181-16025293)
[»] chr5 (1 HSPs)
chr5 (62-124)||(37026857-37026919)


Alignment Details
Target: scaffold0400 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 12829 - 12997
Alignment:
Q  19 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12829 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 12928  T
Q  119 ttccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaatgtctctg 187  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  12929 ttccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg 12997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 6541 - 6701
Alignment:
Q  19 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 118  Q
    |||||| ||||||| |||||||| |||| ||| ||| |||||| |||||| |||| | |||||||||||||||||||||| || ||||| ||||| ||||    
T  6541 aataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatcatacaaccaatttgaaggtccaattccaaaca 6640  T
Q  119 ttccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa 179  Q
    |||||||||||  ||| ||||||| ||||||| | ||||||||||||||||||||||||||    
T  6641 ttccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgtggtaa 6701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 13472 - 13640
Alignment:
Q  19 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13472 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 13571  T
Q  119 ttccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaatgtctctg 187  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  13572 ttccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg 13640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 7185 - 7345
Alignment:
Q  19 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 118  Q
    |||||| ||||||| |||||||| |||| ||| ||| |||||| |||||| |||| | |||||||||||||||||||||| || ||||| ||||| ||||    
T  7185 aataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatcatacaaccaatttgaaggtccaattccaaaca 7284  T
Q  119 ttccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaa 179  Q
    |||||||||||  ||| ||||||| ||||||| | ||||||||||||||||||||||||||    
T  7285 ttccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgtggtaa 7345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 9e-72; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 14532807 - 14532639
Alignment:
Q  19 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||    
T  14532807 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccaattccaagca 14532708  T
Q  119 ttccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaatgtctctg 187  Q
    || ||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  14532707 ttacagccttccaaaaagctccaattgaagcacttagaaataacaaaggcttgtgtggtaatgtctctg 14532639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 14504071 - 14504194
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||| ||||||| ||||||    
T  14504071 atgttaagcttgacaattattgatatatcatacaaccaattggagggtccgattccaagcattccagccttccaacaagctccaattgaagcactgagaa 14504170  T
Q  158 ataacaaaggcttgtgtggtaatg 181  Q
    | ||||||| ||||||||||||||    
T  14504171 acaacaaagacttgtgtggtaatg 14504194  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 14482035 - 14482202
Alignment:
Q  19 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 118  Q
    |||||||||||||| |||||||| || || || ||| ||||||||||||||| || ||| |||||||| |||||||| ||||||||||||||||| | ||    
T  14482035 aataatctttctggtaccattcccttcagatatggttagatgttaagcttgataactgtagatatatcgtacaaccagttggagggtccgattccaagca 14482134  T
Q  119 ttccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaatgtctct 186  Q
    ||||||||||||  ||| |||||| ||||||| ||||||| ||||||| |||||||||||||| ||||    
T  14482135 ttccagccttccagaaaactccaattgaagcactgagaaacaacaaagacttgtgtggtaatgcctct 14482202  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 15002196 - 15002325
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||||||| ||| |||||| |||| |||  || |||||||| ||||||| ||||||    
T  15002196 atgttaagcttgacaactgttgatatatcttacaaccagttggagggtccgactccaaacattacagctttcgaaagagctccaattgaagcactgagaa 15002295  T
Q  158 ataacaaaggcttgtgtggtaatgtctctg 187  Q
    ||||||||||||||||||||||||| ||||    
T  15002296 ataacaaaggcttgtgtggtaatgtttctg 15002325  T

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Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 15032547 - 15032676
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||| |||||| |||| |||  ||||||||||| ||||||| ||| ||    
T  15032547 atgttaagcttgacaactgttgatatatcttacaaccagttggagggtccaattccaaacattacagctttcaaaaaagctccaattgaagcattgacaa 15032646  T
Q  158 ataacaaaggcttgtgtggtaatgtctctg 187  Q
    ||||||||||||| ||||||||||||||||    
T  15032647 ataacaaaggcttatgtggtaatgtctctg 15032676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 15037109 - 15037238
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||| |||| |||  || |||||||| ||||||| ||| ||    
T  15037109 atgttaagcttgacaactgttgatatatcttacaaccagttggagggtccgattccaaacattacagctttcaaaagagctccaattgaagcattgacaa 15037208  T
Q  158 ataacaaaggcttgtgtggtaatgtctctg 187  Q
    ||||||||||||| ||||||||||||||||    
T  15037209 ataacaaaggcttatgtggtaatgtctctg 15037238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 14467853 - 14468015
Alignment:
Q  19 aataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaaca 118  Q
    |||||||||||||| |||||||  || ||||  | | | |||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||| | ||    
T  14467853 aataatctttctggtaccattctcttcagctcagttgatatgttaagcttgacaactgtagatatatcgtacaaccagttggagggtccgattccaagca 14467952  T
Q  119 ttccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaatg 181  Q
    |||||||||||| | | ||||||| ||||||| ||||||| ||||||| ||||||||||||||    
T  14467953 ttccagccttccaacaggctccaattgaagcactgagaaacaacaaagacttgtgtggtaatg 14468015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 15011089 - 15011218
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||  || |||| |||  || |||||||| ||||||| ||| ||    
T  15011089 atgttaagcttgacaactgttgatatatcttacaaccaattggagggtccgattccaaatgttacagctttcaaaagagctccaattgaagcattgacaa 15011188  T
Q  158 ataacaaaggcttgtgtggtaatgtctctg 187  Q
    ||||||||||||| ||||||||||||||||    
T  15011189 ataacaaaggcttatgtggtaatgtctctg 15011218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 15040809 - 15040962
Alignment:
Q  34 accattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaa 133  Q
    |||||||| |||| ||| ||| |||||| | ||||||||| |||||||||||||| |||||||||| ||||||| ||||| || ||| || ||||||||     
T  15040809 accattcccttgacctatggtgagatgtcaggcttgacaactgttgatatatcatgcaaccaattgaagggtccaattccaaaaatttcatccttcctac 15040908  T
Q  134 aagctccaactgaagcagtgagaaataacaaaggcttgtgtggtaatgtctctg 187  Q
    |||| |||  ||||||| | ||||||||||||||||||||||||||||||||||    
T  15040909 aagccccatttgaagcattaagaaataacaaaggcttgtgtggtaatgtctctg 15040962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 14522647 - 14522518
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||| ||||||| |||||||||||| |||||||  ||||||||||| ||||| |||||| |||| |||| || |||||||  ||||||| | ||||    
T  14522647 atgttaagtttgacaactgttgatatatcttacaaccggttggagggtccaattccaaacattacagcattccaaagagctccagttgaagcatttagaa 14522548  T
Q  158 ataacaaaggcttgtgtggtaatgtctctg 187  Q
    |||||||||||||||| |||||||||||||    
T  14522547 ataacaaaggcttgtgcggtaatgtctctg 14522518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 15017204 - 15017333
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||||||||||| ||||||| |||| |||||||| ||||||||||||| ||| |||||| |||| |||  || |||||||| ||||||| ||| ||    
T  15017204 atgttaagcttgacaactgttgatgtatcttacaaccagttggagggtccgactccaaacattacagctttcggaagagctccaattgaagcattgacaa 15017303  T
Q  158 ataacaaaggcttgtgtggtaatgtctctg 187  Q
    ||||||| ||||||||||||||| ||||||    
T  15017304 ataacaagggcttgtgtggtaatatctctg 15017333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 16102969 - 16103098
Alignment:
Q  58 atgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaa 157  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||  | || ||||||| ||| |||  ||| ||| |||  ||||   ||||||    
T  16102969 atgttaagcttgacatctgttgatatatcatataaccaattggagggtccactccccaacattcgagctttcagaaacgctacaatcgaagtgttgagaa 16103068  T
Q  158 ataacaaaggcttgtgtggtaatgtctctg 187  Q
    |||| |||| ||||||||||||||||||||    
T  16103069 ataataaagacttgtgtggtaatgtctctg 16103098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 14605985 - 14606116
Alignment:
Q  56 agatgttaagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgag 155  Q
    ||||||| ||||| |||  ||||||||||||||| |||||||||||||||||  | || || |||| ||| |||   || ||| ||| |||||  |||||    
T  14605985 agatgttcagcttaacatctgttgatatatcatataaccaattggagggtccactccccaatattcgagctttcagcaacgctacaattgaagtggtgag 14606084  T
Q  156 aaataacaaaggcttgtgtggtaatgtctctg 187  Q
    |||||| |||||||||||||||||||||||||    
T  14606085 aaataataaaggcttgtgtggtaatgtctctg 14606116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 16025181 - 16025293
Alignment:
Q  75 tgttgatatatcatacaaccaattggagggtccgattcctaacattccagccttcctaaaagctccaactgaagcagtgagaaataacaaaggcttgtgt 174  Q
    ||||||||||||||| |||||||||||||||||  | || || |||| ||| |||   || ||| ||| |||||  ||||||||||| ||||||||||||    
T  16025181 tgttgatatatcatataaccaattggagggtccactccccaatattcgagctttcagcaacgctacaattgaagtggtgagaaataataaaggcttgtgt 16025280  T
Q  175 ggtaatgtctctg 187  Q
    |||||||||||||    
T  16025281 ggtaatgtctctg 16025293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 37026857 - 37026919
Alignment:
Q  62 taagcttgacaattgttgatatatcatacaaccaattggagggtccgattcctaacattccag 124  Q
    ||||||||||||| ||||| ||||| || |||||||| |||||| | |||||||||| |||||    
T  37026857 taagcttgacaatggttgacatatcttataaccaattagagggttcaattcctaacaatccag 37026919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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