View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_2 (Length: 383)
Name: NF14696_low_2
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 40283866 - 40283490
Alignment:
| Q |
1 |
tcattaagcactttataacaaagttggttgaagaaagagatcactttgttgcaagataaaaatgaaggactaactcgttcacttttacgacataaaggac |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
40283866 |
tcattaagcactttataacaaagttggatgaagaaagagatcaatttgttgcaaaataaaaataaaggactaactcgttcacttttacgacctaaaggac |
40283767 |
T |
|
| Q |
101 |
caatttaaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcatttggtatgttatttactattgagcgcattttcgcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40283766 |
caatttaaaactaaaaggactaatcagatacaaacgtcaaacttaaagaaacctaggatgcatttggtatgttatttactattgagcacattttcgcttg |
40283667 |
T |
|
| Q |
201 |
tagattgacatactctcgatgattcctattgatacatcgggagtttgaagggaggtgttagataatatgctattgcacttaggttgttggcccttttata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40283666 |
tagattgacatactctcgatgattcctattgatacatcgggagtttgaagggaggtgttagataatatgctattgcacttaggttgttggcccttttata |
40283567 |
T |
|
| Q |
301 |
tgtataagttagtagtctagtccttttagcttttgatatacattctctttgtaaaccttattttcacaggttctgct |
377 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
40283566 |
tttataagttagtagtctagtccttttagcttttgatatacattctctttgtaaaccttattttcacatgttatgct |
40283490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 15089055 - 15088954
Alignment:
| Q |
65 |
aaggactaactcgttcacttttacgacataaaggaccaatttaaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcatt |
164 |
Q |
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||||||||||| | |||||||||| | ||||||||||||||| ||||||||||| |||||| |||| |||||| |||||||||| | || ||||||||| |
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| T |
15089055 |
aaggactaacttgctcacttttactaaataaaggaccaatttgaaactaaaagggctaatctgatagaaacgtcaaacttaaaggaccccgggatgcatt |
15088956 |
T |
|
| Q |
165 |
tg |
166 |
Q |
| |
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|| |
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|
| T |
15088955 |
tg |
15088954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 34366873 - 34366815
Alignment:
| Q |
107 |
aaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcattt |
165 |
Q |
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||||||||||||||||||| | ||||||| || ||||||||| | || ||||||||||| |
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| T |
34366873 |
aaaactaaaaggactaatccggtacaaacattcaacttaaaggaccccaggatgcattt |
34366815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 10099805 - 10099862
Alignment:
| Q |
92 |
ataaaggaccaatttaaaactaaaaggactaatcagatacaaacgttaaacttaaaga |
149 |
Q |
| |
|
||||| |||||| || |||||||||||| ||| ||||||||||||||||||||||| |
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| T |
10099805 |
ataaaagaccaacttctaactaaaaggacaaattcgatacaaacgttaaacttaaaga |
10099862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 4248875 - 4248823
Alignment:
| Q |
65 |
aaggactaactcgttcacttttac-gacataaaggaccaatttaaaactaaaa |
116 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||| || |||||||||||||||| |
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| T |
4248875 |
aaggactaacttgtttacttttaccgacataaaagatcaatttaaaactaaaa |
4248823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 4249315 - 4249355
Alignment:
| Q |
107 |
aaaactaaaaggactaatcagatacaaacgttaaacttaaa |
147 |
Q |
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||||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
4249315 |
aaaactaaaaggattaatctgatacaaactttaaacttaaa |
4249355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 25576293 - 25576370
Alignment:
| Q |
90 |
acataaaggaccaatttaaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcatttgg |
167 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||||| | |||||||||||||||||||| | || |||||||| |||| |
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| T |
25576293 |
acataaaggactaatttgaaactaaaacgactaatccggtacaaacgttaaacttaaaggaccccaggatgcaattgg |
25576370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 24755143 - 24755195
Alignment:
| Q |
65 |
aaggactaactcgttcacttttac-gacataaaggaccaatttaaaactaaaa |
116 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| ||||||||| |
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| T |
24755143 |
aaggactaacttgttcacttttacagacataaaggaccaatttgaaactaaaa |
24755195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 11862152 - 11862106
Alignment:
| Q |
77 |
gttcacttttac-gacataaaggaccaatttaaaactaaaaggacta |
122 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||| |||| |
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|
| T |
11862152 |
gttcacttttactgacataaaggaccaatttgaaactaaaagaacta |
11862106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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