View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_3 (Length: 383)
Name: NF14696_low_3
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 2853984 - 2854202
Alignment:
| Q |
17 |
ctacatacaagcatgaaagcttaaaaaattgtcaatactaggaagtttcagtactaagatttatttattttcatatatacaaatcataaactgaaatttc |
116 |
Q |
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| T |
2853984 |
ctacatacaagcatgaaagcttaaaaaattgtcaatactaggaagtttcagtactaagatttatttattttcatatatacaaatcataaactaaaatttc |
2854083 |
T |
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| Q |
117 |
ttattcaaaatttgttgaaagatgcaaagggtgagacttacaatgcaagaatacaaaagtaccgttcacatgcatggacttgtaaaactattc-aagtct |
215 |
Q |
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| T |
2854084 |
ttattcaaaatttgttgaaagatgcaaagggtgagacttacaatgcaagaatacaaaagtaccgttcacatgcatggacttgtaaaactattctaagtct |
2854183 |
T |
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| Q |
216 |
tcacaaattatttcttacc |
234 |
Q |
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||||||||| ||||||||| |
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| T |
2854184 |
tcacaaattctttcttacc |
2854202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 2854336 - 2854460
Alignment:
| Q |
245 |
tttaaaaagtcatttaaaccaaaccaaat------caatgcaacatggattggtttgatttgtgcagttttttttctagtcaatannnnnnnnnnncaat |
338 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |
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| T |
2854336 |
tttaaaaagtcatttaaaccaaaccaaatcaaaatcaatgcaacatggattggtttgatttgtgc-ggtttttttctagtcaataattttttttttcaat |
2854434 |
T |
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| Q |
339 |
attaaaatcatgttaaaaaggtaaaa |
364 |
Q |
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| T |
2854435 |
attaaaatcatgttaaaaaggtaaaa |
2854460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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